README.md
pyproject.toml
bella_companion/__init__.py
bella_companion/cli.py
bella_companion.egg-info/PKG-INFO
bella_companion.egg-info/SOURCES.txt
bella_companion.egg-info/dependency_links.txt
bella_companion.egg-info/entry_points.txt
bella_companion.egg-info/requires.txt
bella_companion.egg-info/top_level.txt
bella_companion/eucovid/__init__.py
bella_companion/eucovid/run_beast.py
bella_companion/platyrrhine/__init__.py
bella_companion/platyrrhine/results.py
bella_companion/platyrrhine/run_beast.py
bella_companion/platyrrhine/summarize_logs.py
bella_companion/simulations/__init__.py
bella_companion/simulations/features.py
bella_companion/simulations/generate_data.py
bella_companion/simulations/generate_figures.py
bella_companion/simulations/metrics.py
bella_companion/simulations/run_beast.py
bella_companion/simulations/summarize_logs.py
bella_companion/simulations/figures/__init__.py
bella_companion/simulations/figures/epi_multitype_results.py
bella_companion/simulations/figures/epi_skyline_results.py
bella_companion/simulations/figures/fbd_2traits_results.py
bella_companion/simulations/figures/fbd_no_traits_results.py
bella_companion/simulations/figures/scenarios.py
bella_companion/simulations/figures/utils.py
bella_companion/simulations/figures/explain/__init__.py
bella_companion/simulations/figures/explain/pdp.py
bella_companion/simulations/figures/explain/shap.py
bella_companion/simulations/scenarios/__init__.py
bella_companion/simulations/scenarios/common.py
bella_companion/simulations/scenarios/epi_multitype.py
bella_companion/simulations/scenarios/epi_skyline.py
bella_companion/simulations/scenarios/fbd_2traits.py
bella_companion/simulations/scenarios/fbd_no_traits.py
bella_companion/simulations/scenarios/scenario.py
bella_companion/utils/__init__.py
bella_companion/utils/beast.py
bella_companion/utils/explain.py
bella_companion/utils/slurm.py