MANIFEST.in
README.md
README_pypi.md
pyproject.toml
setup.cfg
setup.py
src/pyhiv/__init__.py
src/pyhiv/cli.py
src/pyhiv/config.py
src/pyhiv/align/__init__.py
src/pyhiv/align/align_with_reference.py
src/pyhiv/align/famsa.py
src/pyhiv/loading/__init__.py
src/pyhiv/loading/read_fastas.py
src/pyhiv/loading/reference_genomes/HIV1_REF_2023_genome_DNA.csv
src/pyhiv/loading/reference_genomes/HXB2_coordinates.csv
src/pyhiv/loading/reference_genomes/sequences_with_locations.tsv
src/pyhiv/loading/reference_genomes/HXB2_fasta/K03455-B.fasta
src/pyhiv/loading/reference_genomes/reference_fastas/AB253421-A1.fasta
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src/pyhiv/loading/reference_genomes/reference_fastas/U88824-D.fasta
src/pyhiv/loading/reference_genomes/reference_fastas/U88826-G.fasta
src/pyhiv/report/__init__.py
src/pyhiv/report/constants.py
src/pyhiv/report/pdf_generator.py
src/pyhiv/report/reporter.py
src/pyhiv/report/utils.py
src/pyhiv/report/visualization.py
src/pyhiv/split/__init__.py
src/pyhiv/split/split.py
src/pyhiv_tools.egg-info/PKG-INFO
src/pyhiv_tools.egg-info/SOURCES.txt
src/pyhiv_tools.egg-info/dependency_links.txt
src/pyhiv_tools.egg-info/entry_points.txt
src/pyhiv_tools.egg-info/not-zip-safe
src/pyhiv_tools.egg-info/requires.txt
src/pyhiv_tools.egg-info/top_level.txt