AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
pyproject.toml
setup.cfg
setup.py
cellmaps_utils/__init__.py
cellmaps_utils/apms_readme.txt
cellmaps_utils/apmstool.py
cellmaps_utils/basecmdtool.py
cellmaps_utils/cellmaps_utilscmd.py
cellmaps_utils/challenge.py
cellmaps_utils/constants.py
cellmaps_utils/crispr_readme.txt
cellmaps_utils/crisprtool.py
cellmaps_utils/ddotconverter.py
cellmaps_utils/exceptions.py
cellmaps_utils/hcx_utils.py
cellmaps_utils/hidefconverter.py
cellmaps_utils/hierdiff.py
cellmaps_utils/ifimage_readme.txt
cellmaps_utils/iftool.py
cellmaps_utils/logutils.py
cellmaps_utils/music_utils.py
cellmaps_utils/ndexupload.py
cellmaps_utils/provenance.py
cellmaps_utils/statsgenerator.py
cellmaps_utils/tabletool.py
cellmaps_utils.egg-info/PKG-INFO
cellmaps_utils.egg-info/SOURCES.txt
cellmaps_utils.egg-info/dependency_links.txt
cellmaps_utils.egg-info/not-zip-safe
cellmaps_utils.egg-info/requires.txt
cellmaps_utils.egg-info/top_level.txt
docs/Makefile
docs/authors.rst
docs/cellmaps_utils.rst
docs/cm4ai_data_release.rst
docs/conf.py
docs/contributing.rst
docs/cx2_to_hcx_conversion.rst
docs/ddot_converters.rst
docs/devbranches.rst
docs/developer.rst
docs/hidef_converters.rst
docs/hierarchical_networks.rst
docs/hierarchy_robustness.rst
docs/history.rst
docs/in_project.rst
docs/index.rst
docs/installation.rst
docs/integrationtesting.rst
docs/make.bat
docs/modules.rst
docs/newrelease.rst
docs/outputs.rst
docs/pypircfile.rst
docs/upload_to_ndex.rst
docs/usage.rst
docs/versioningscheme.rst
docs/_build/html/_static/file.png
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
tests/.DS_Store
tests/__init__.py
tests/test_apmstool.py
tests/test_basecommandlinetool.py
tests/test_challenge.py
tests/test_crisprtool.py
tests/test_ddotconverter.py
tests/test_helloworldcommand.py
tests/test_hidefconverter.py
tests/test_iftool.py
tests/test_integation_provenance.py
tests/test_logutils.py
tests/test_ndexupload.py
tests/test_provenance.py
tests/test_solutiongenerator.py
tests/test_statsgenerator.py
tests/test_tabletool.py
tests/test_tworeplcoelutionchallengegenerator.py
tests/data/ddot_output.ont
tests/data/hidef_output.edges
tests/data/hidef_output.nodes
tests/data/parent_edgelist
tests/data/reactome_ddot.txt
tests/data/repl1_example.tsv
tests/data/repl1_repl2_combined.tsv
tests/data/repl1_repl2_id_mapping.json
tests/data/repl2_example.tsv
tests/data/ro-crate-metadata.json
tests/data/test_password
tests/data/testsolrepl1.tsv
tests/data/testsolrepl2.tsv
tests/data/testsolution.csv
tests/data/testsolution_genes.cx2
tests/data/images/blue.jpg
tests/data/images/green.jpg
tests/data/images/red.jpg
tests/data/images/yellow.jpg