.gitattributes
.gitignore
.gitlab-ci.yml
.gitreview
.pylintrc
.readthedocs.yml
.zenodo.json
AUTHORS.txt
CHANGELOG.rst
CONTRIBUTING.md
COPYING
LICENSE.txt
MANIFEST.in
Makefile
README.rst
setup.py
tox.ini
.github/workflows/release.yml
.github/workflows/test.yml
bluepyemodel/__init__.py
bluepyemodel.egg-info/PKG-INFO
bluepyemodel.egg-info/SOURCES.txt
bluepyemodel.egg-info/dependency_links.txt
bluepyemodel.egg-info/requires.txt
bluepyemodel.egg-info/top_level.txt
bluepyemodel/access_point/__init__.py
bluepyemodel/access_point/access_point.py
bluepyemodel/access_point/local.py
bluepyemodel/data/ISI_CV_Shai2015.csv
bluepyemodel/data/__init__.py
bluepyemodel/data/spike_rheobase_pA_BeaulieuLaroche2021.csv
bluepyemodel/data/utils.py
bluepyemodel/ecode/__init__.py
bluepyemodel/ecode/apwaveform.py
bluepyemodel/ecode/comb.py
bluepyemodel/ecode/customfromfile.py
bluepyemodel/ecode/dehyperpol.py
bluepyemodel/ecode/dendrite.py
bluepyemodel/ecode/firepattern.py
bluepyemodel/ecode/hyperdepol.py
bluepyemodel/ecode/idrest.py
bluepyemodel/ecode/iv.py
bluepyemodel/ecode/negcheops.py
bluepyemodel/ecode/noise.py
bluepyemodel/ecode/noiseou3.py
bluepyemodel/ecode/poscheops.py
bluepyemodel/ecode/probampanmda_ems.py
bluepyemodel/ecode/ramp.py
bluepyemodel/ecode/random_square_inputs.py
bluepyemodel/ecode/sahp.py
bluepyemodel/ecode/sinespec.py
bluepyemodel/ecode/spikerec.py
bluepyemodel/ecode/stimulus.py
bluepyemodel/ecode/subwhitenoise.py
bluepyemodel/ecode/thresholdaddition.py
bluepyemodel/ecode/whitenoise.py
bluepyemodel/ecode/data/NoiseOU3.txt
bluepyemodel/ecode/data/SubWhiteNoise.txt
bluepyemodel/ecode/data/WhiteNoise.txt
bluepyemodel/efeatures_extraction/__init__.py
bluepyemodel/efeatures_extraction/auto_targets.py
bluepyemodel/efeatures_extraction/efeatures_extraction.py
bluepyemodel/efeatures_extraction/target.py
bluepyemodel/efeatures_extraction/targets_configuration.py
bluepyemodel/efeatures_extraction/targets_configurator.py
bluepyemodel/efeatures_extraction/trace_file.py
bluepyemodel/emodel_pipeline/__init__.py
bluepyemodel/emodel_pipeline/emodel.py
bluepyemodel/emodel_pipeline/emodel_metadata.py
bluepyemodel/emodel_pipeline/emodel_pipeline.py
bluepyemodel/emodel_pipeline/emodel_script.py
bluepyemodel/emodel_pipeline/emodel_settings.py
bluepyemodel/emodel_pipeline/emodel_workflow.py
bluepyemodel/emodel_pipeline/plotting.py
bluepyemodel/evaluation/__init__.py
bluepyemodel/evaluation/efeature_configuration.py
bluepyemodel/evaluation/efel_feature_bpem.py
bluepyemodel/evaluation/evaluation.py
bluepyemodel/evaluation/evaluator.py
bluepyemodel/evaluation/fitness_calculator_configuration.py
bluepyemodel/evaluation/modifiers.py
bluepyemodel/evaluation/protocol_configuration.py
bluepyemodel/evaluation/protocols.py
bluepyemodel/evaluation/recordings.py
bluepyemodel/evaluation/utils.py
bluepyemodel/export_emodel/__init__.py
bluepyemodel/export_emodel/export_emodel.py
bluepyemodel/export_emodel/utils.py
bluepyemodel/export_emodel/templates/cell_template.jinja2
bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2
bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2
bluepyemodel/model/__init__.py
bluepyemodel/model/distribution_configuration.py
bluepyemodel/model/mechanism_configuration.py
bluepyemodel/model/model.py
bluepyemodel/model/model_configuration.py
bluepyemodel/model/model_configurator.py
bluepyemodel/model/morphology_configuration.py
bluepyemodel/model/morphology_utils.py
bluepyemodel/model/neuron_model_configuration.py
bluepyemodel/model/parameter_configuration.py
bluepyemodel/model/utils.py
bluepyemodel/optimisation/__init__.py
bluepyemodel/optimisation/optimisation.py
bluepyemodel/tasks/__init__.py
bluepyemodel/tasks/config.py
bluepyemodel/tasks/luigi_custom.py
bluepyemodel/tasks/luigi_tools.py
bluepyemodel/tasks/emodel_creation/__init__.py
bluepyemodel/tasks/emodel_creation/optimisation.py
bluepyemodel/tools/__init__.py
bluepyemodel/tools/mechanisms.py
bluepyemodel/tools/morphology.py
bluepyemodel/tools/multiprocessing.py
bluepyemodel/tools/multiprotocols_efeatures_utils.py
bluepyemodel/tools/search_pdfs.py
bluepyemodel/tools/utils.py
bluepyemodel/validation/__init__.py
bluepyemodel/validation/validation.py
bluepyemodel/validation/validation_functions.py
doc/Makefile
doc/images/classes_schema.png
doc/images/pipeline.png
doc/source/.gitignore
doc/source/api_ref.rst
doc/source/changelog.rst
doc/source/conf.py
doc/source/index.rst
doc/source/logo/BluePyEModelBanner.jpg
examples/L5PC/.gitignore
examples/L5PC/LICENSE.txt
examples/L5PC/LICENSE_CC-BY-CA-SA-4.0
examples/L5PC/README.rst
examples/L5PC/analysis.sbatch
examples/L5PC/analysis.sh
examples/L5PC/create_venv.sh
examples/L5PC/download_ephys_data.sh
examples/L5PC/exploit_models.ipynb
examples/L5PC/export_hoc.sbatch
examples/L5PC/export_hoc.sh
examples/L5PC/extract.sbatch
examples/L5PC/extract.sh
examples/L5PC/monitor_optimisation.ipynb
examples/L5PC/monitor_optimisation.py
examples/L5PC/optimisation.sbatch
examples/L5PC/optimisation.sh
examples/L5PC/pipeline.py
examples/L5PC/targets.py
examples/L5PC/config/recipes.json
examples/L5PC/config/extract_config/.gitignore
examples/L5PC/config/features/.gitignore
examples/L5PC/config/params/pyr.json
examples/L5PC/mechanisms/CaDynamics_DC0.mod
examples/L5PC/mechanisms/Ca_HVA.mod
examples/L5PC/mechanisms/Ca_HVA2.mod
examples/L5PC/mechanisms/Ca_LVAst.mod
examples/L5PC/mechanisms/Ih.mod
examples/L5PC/mechanisms/K_Pst.mod
examples/L5PC/mechanisms/K_Tst.mod
examples/L5PC/mechanisms/KdShu2007.mod
examples/L5PC/mechanisms/NaTg.mod
examples/L5PC/mechanisms/NaTg2.mod
examples/L5PC/mechanisms/Nap_Et2.mod
examples/L5PC/mechanisms/SK_E2.mod
examples/L5PC/mechanisms/SKv3_1.mod
examples/L5PC/mechanisms/StochKv2.mod
examples/L5PC/mechanisms/StochKv3.mod
examples/L5PC/morphologies/C060114A5.asc