Metadata-Version: 2.4
Name: towbintools
Version: 0.3.8
Summary: All the tools used by the Towbin Lab !
Author-email: Sacha Psalmon <sacha.psalmon@unibe.ch>, Boris Gusev <boris.gusev@unibe.ch>
Maintainer-email: Sacha Psalmon <sacha.psalmon@unibe.ch>
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: torch
Requires-Dist: pytorch-lightning
Requires-Dist: torchmetrics
Requires-Dist: pytorch-toolbelt
Requires-Dist: segmentation-models-pytorch
Requires-Dist: timm
Requires-Dist: albumentations
Requires-Dist: csbdeep
Requires-Dist: scikit-learn
Requires-Dist: xgboost
Requires-Dist: joblib
Requires-Dist: opencv-contrib-python
Requires-Dist: scikit-image
Requires-Dist: tifffile
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: polars
Requires-Dist: pyarrow
Requires-Dist: scipy
Requires-Dist: ome-types
Requires-Dist: whittaker-eilers
Provides-Extra: dev
Requires-Dist: black; extra == "dev"
Requires-Dist: isort; extra == "dev"
Requires-Dist: pre-commit; extra == "dev"
Dynamic: license-file

# towbintools!

This is the package containing all the important functions used by the Towbin Lab of the University of Bern.
Most of the code is a python translation of our old Matlab pipeline.

This package goes hand in hand with our modular pipelining tool : <https://github.com/spsalmon/towbintools_pipeline>

Documentation : <https://towbintools.readthedocs.io/en/latest/towbintools.html>
## Install the package using pip

Simply run the following command:

```bash
pip3 install towbintools
```

## Build the package and install it

1. First, make sure build is installed:

   ```bash
   pip3 install build

   ```

2. Go to the package directory, eg:

   ```bash
   cd ~/towbintools

   ```

3. Build the package:

   ```bash
   python3 -m build

   ```

4. Install the package you just built:

   ```bash
   pip3 install dist/*.whl
   ```
