Metadata-Version: 1.1
Name: VirtualMicrobes
Version: 0.1.4
Summary: Virtual Microbe Evolutionary Simulator
Home-page: https://bitbucket.org/thocu/virtualmicrobes
Author: Thomas D. Cuypers
Author-email: thomas.cuypers@gmail.com
License: UNKNOWN
Description: README
        ------
        
        Virtual Microbes Evolutionary Simulator 
        
        Features
        --------
        
        * Individual based model of evolving microbes.
        * Explicit model of evolving genome.
        * Spatially extended environment.
        * Microbes evolve metabolic capacities to exploit environmental nutrients.
        
        Dependencies and scripts
        ------------------------
        
        
        - depends on:
            - `cython <http://cython.org>`_
            - `matplotlib <http://matplotlib.org>`_
            - `networkx <http://networkx.github.io/>`_ (network analysis and drawing)
            - `ete3 <http://etetoolkit.org/>`_ (tree drawing and phylogenetics)
            - others see requirements.txt
        
        
        Install
        -------
        
        ``pip install VirtualMicrobes``
        
        Usage
        -----
        
        can't wait to simulate:
        
            ``vermicelli.py evo <simulation_dir>``
            
        open pandora's box of options:
        
        - ``vermicelli.py --help``
        - ``vermicelli.py evo --help``
        
        Documentation
        -------------
        
        http://virtualmicrobes.readthedocs.io/en/latest/ (in progress..)
        CHANGELOG
        ---------
        
        nothing changed here
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: Unix
Classifier: Operating System :: POSIX
Classifier: Operating System :: Microsoft :: Windows
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: Implementation :: CPython
Classifier: Programming Language :: Cython
Classifier: Topic :: Scientific/Engineering :: Artificial Life
Classifier: Topic :: Scientific/Engineering
