 SIMULATE PARAMS
--integrator--
absolute_error
between_diffusion_reports
delta_t_between_diff
diffusion_constant
diffusion_steps
init_step_size
num_threads
relative_error
step_function

--file-paths--
base_dir
load_file
source_path
utility_dir

--competition--
competition
measured_non
measured_non_scaling

--hidden
load_test
marker_names
phylo_shelf
shelve_fraction
shelve_time

duration
fluctuate_time
grace_time
graphs_single_core
mark_time
name
phylo_plot_time
phylo_types
plot_time
save_time
show


 ENV PARAMS
--grid--
grid_cols
grid_rows
per_grid_cell_volume
wrap_ew
wrap_ns

--influx--
building_block_influx
energy_influx
fraction_influx
influx
influx_range
influx_variance_shape

--metabolism--
--   reaction space
consume_range
ene_energy_range
fraction_mol_imports
fraction_realized_reactions
import_cost_range
max_ene_yield
max_yield
mol_per_ene_class
mol_per_res_class
nr_building_blocks
nr_cell_building_blocks
nr_energy_classes
nr_resource_classes
pathway_branching
pathway_convergence
reaction_schemes
res_energy_range

ene_ext_degr_const

init_external_conc
small_mol_ext_degr_const
toxicity
toxicity_variance_shape

--general--
env_rand_seed

 POP PARAMS
--mutation--
evo_rand_seed
mutation_param_space
mutation_rates
point_mutation_dict
rand_gene_params

--genome--
chromosome_sizes
gene_type_ratios
pop_rand_seed

--internal dynamics-- 
bb_stois
cell_volume
init_prot_mol_conc
init_small_mol_conc
min_bind_score
product_degradation_rate
prot_degr_const
prot_diff_const
small_mol_degr_const
small_mol_diff_const
v_max_growth

--population dynamics--
base_death_rate
init_pop_size
max_cells_per_locality
max_die_off_fraction
measured_non_scaling
non
product_spending_fraction
product_toxicity
reproduction_cost
scaled_non
toxic_building_blocks
toxicity_scaling
                                                              
