LICENSE
README.md
pyproject.toml
evaluation_tests_and_analysis/luna_matplotlib_theme.py
evaluation_tests_and_analysis/indra_vs_texttoKG_tests/indra_to_bel.py
evaluation_tests_and_analysis/indra_vs_texttoKG_tests/indra_vs_llm.py
evaluation_tests_and_analysis/llm_tests/test_pipeline.py
evaluation_tests_and_analysis/reviewers_results_comparison/comp_reviews.py
evaluation_tests_and_analysis/reviewers_results_comparison/plot_scores.py
junk/hgnc_grounding.py
junk/setup.py
main_scripts/__init__.py
main_scripts/batch_processor.py
main_scripts/bel_main.py
main_scripts/bel_model.py
main_scripts/convert_to_cx2.py
main_scripts/get_interactions.py
main_scripts/grounding_genes.py
main_scripts/indra_download_extract.py
main_scripts/process_text_file.py
main_scripts/pub.py
main_scripts/sentence_level_extraction.py
main_scripts/transform_bel_statements.py
tests/test_hgnc_grounding.py
tests/test_main.py
textToKnowledgeGraph/README.md
textToKnowledgeGraph/__init__.py
textToKnowledgeGraph/bel_model.py
textToKnowledgeGraph/convert_to_cx2.py
textToKnowledgeGraph/cx_style.json
textToKnowledgeGraph/get_interactions.py
textToKnowledgeGraph/grounding_genes.py
textToKnowledgeGraph/indra_download_extract.py
textToKnowledgeGraph/main.py
textToKnowledgeGraph/process_text_file.py
textToKnowledgeGraph/prompt_file_v7.txt
textToKnowledgeGraph/pub.py
textToKnowledgeGraph/sentence_level_extraction.py
textToKnowledgeGraph/transform_bel_statements.py
texttoknowledgegraph.egg-info/PKG-INFO
texttoknowledgegraph.egg-info/SOURCES.txt
texttoknowledgegraph.egg-info/dependency_links.txt
texttoknowledgegraph.egg-info/entry_points.txt
texttoknowledgegraph.egg-info/requires.txt
texttoknowledgegraph.egg-info/top_level.txt
utilities/compare_annotations.py
utilities/get_pmcid.py
utilities/run_convert_cx2.py
venv/bin/dumppdf.py
venv/bin/jp.py
venv/bin/pdf2txt.py
venv/bin/runxlrd.py
venv/bin/vba_extract.py
wheel_check/textToKnowledgeGraph/__init__.py
wheel_check/textToKnowledgeGraph/bel_model.py
wheel_check/textToKnowledgeGraph/convert_to_cx2.py
wheel_check/textToKnowledgeGraph/get_interactions.py
wheel_check/textToKnowledgeGraph/grounding_genes.py
wheel_check/textToKnowledgeGraph/indra_download_extract.py
wheel_check/textToKnowledgeGraph/main.py
wheel_check/textToKnowledgeGraph/process_text_file.py
wheel_check/textToKnowledgeGraph/pub.py
wheel_check/textToKnowledgeGraph/sentence_level_extraction.py