all plots:

lbr aa-lbi aa-lbr joyplots cons-dist-aa lbi slices lbf trees

affinity metrics: lbi aa-lbi cons-dist-aa

lbi/lbi-vs-affinity/lbi-vs-affinity-iclust-0.svg aa-lbi/aa-lbi-vs-affinity/aa-lbi-vs-affinity-iclust-0.svg cons-dist-aa/cons-dist-aa-vs-affinity/cons-dist-aa-vs-affinity-iclust-0.svg
lbi/lbi-vs-affinity-ptiles/lbi-vs-affinity-true-tree-ptiles-all-clusters-within-cluster-average.svg aa-lbi/aa-lbi-vs-affinity-ptiles/aa-lbi-vs-affinity-true-tree-ptiles-all-clusters-within-cluster-average.svg cons-dist-aa/cons-dist-aa-vs-affinity-ptiles/cons-dist-aa-vs-affinity-true-tree-ptiles-all-clusters-within-cluster-average.svg
lbi/lbi-vs-affinity-perf-distr/lbi-vs-affinity-true-tree-iclust-0.svg aa-lbi/aa-lbi-vs-affinity-perf-distr/aa-lbi-vs-affinity-true-tree-iclust-0.svg cons-dist-aa/cons-dist-aa-vs-affinity-perf-distr/cons-dist-aa-vs-affinity-true-tree-iclust-0.svg
slices/lbi-affinities-slice.svg slices/lbi-shm-slice.svg slices/lbi-shm-aa-slice.svg slices/lbi-min_target_distances-slice.svg
slices/aa-lbi-affinities-slice.svg slices/aa-lbi-shm-slice.svg slices/aa-lbi-shm-aa-slice.svg slices/aa-lbi-min_target_distances-slice.svg
slices/cons-dist-aa-affinities-slice.svg slices/cons-dist-aa-shm-slice.svg slices/cons-dist-aa-shm-aa-slice.svg slices/cons-dist-aa-min_target_distances-slice.svg
joyplots/lbi-affinity-joyplot-0.svg joyplots/lbr-affinity-joyplot-0.svg joyplots/aa-lbi-affinity-joyplot-0.svg joyplots/aa-lbr-affinity-joyplot-0.svg
joyplots/cons-dist-aa-affinity-joyplot-0.svg

delta-affinity metrics: lbr aa-lbr

lbr/lbr-vs-n-ancestor-perf-distr/lbr-vs-n-ancestor-true-tree-iclust-0.svg lbr/lbr-vs-daffy-perf-distr/lbr-vs-daffy-true-tree-iclust-0.svg aa-lbr/aa-lbr-vs-n-ancestor-perf-distr/aa-lbr-vs-n-ancestor-true-tree-iclust-0.svg aa-lbr/aa-lbr-vs-daffy-perf-distr/aa-lbr-vs-daffy-true-tree-iclust-0.svg
lbr/lbr-vs-n-ancestor/lbr-vs-n-ancestor-true-tree-iclust-0.svg lbr/lbr-vs-daffy/lbr-vs-daffy-true-tree-iclust-0.svg aa-lbr/aa-lbr-vs-n-ancestor/aa-lbr-vs-n-ancestor-true-tree-iclust-0.svg aa-lbr/aa-lbr-vs-daffy/aa-lbr-vs-daffy-true-tree-iclust-0.svg
lbr/lbr-vs-n-ancestor-ptiles/lbr-vs-n-ancestor-true-tree-ptiles-iclust-0.svg lbr/lbr-vs-daffy-ptiles/lbr-vs-daffy-true-tree-ptiles-iclust-0.svg aa-lbr/aa-lbr-vs-n-ancestor-ptiles/aa-lbr-vs-n-ancestor-true-tree-ptiles-iclust-0.svg aa-lbr/aa-lbr-vs-daffy-ptiles/aa-lbr-vs-daffy-true-tree-ptiles-iclust-0.svg
lbi/distributions/lbi-all-clusters.svg lbr/distributions/lbr-all-clusters.svg aa-lbi/distributions/aa-lbi-all-clusters.svg aa-lbr/distributions/aa-lbr-all-clusters.svg
cons-dist-aa/distributions/cons-dist-aa-all-clusters.svg

lbi (cluster path/fasttree)

trees/lbi-tree-iclust-0.svg

lbr (cluster path/fasttree)

trees/lbr-tree-iclust-0.svg

aa-lbi (cluster path/fasttree)

trees/aa-lbi-tree-iclust-0.svg

aa-lbr (cluster path/fasttree)

trees/aa-lbr-tree-iclust-0.svg

cons-dist-aa (cluster path/fasttree)

trees/cons-dist-aa-tree-iclust-0.svg