LICENSE
README.md
pyproject.toml
src/asap/__init__.py
src/asap/dataset.py
src/asap/task.py
src/asap/dataloader/__init__.py
src/asap/dataloader/augmentation.py
src/asap/dataloader/base.py
src/asap/dataloader/bounded.py
src/asap/dataloader/bw_to_data.py
src/asap/dataloader/peak.py
src/asap/dataloader/wg.py
src/asap/dataloader/utils/__init__.py
src/asap/dataloader/utils/data_bed.py
src/asap/dataloader/utils/data_bw.py
src/asap/dataloader/utils/fnv64.py
src/asap/dataloader/utils/io.py
src/asap/dataloader/utils/seq.py
src/asap/models/__init__.py
src/asap/models/convnext_cnn.py
src/asap/models/convnext_dcnn.py
src/asap/models/convnext_lstm.py
src/asap/models/convnext_transformer.py
src/asap/models/dilated_cnn.py
src/asap/models/load_model.py
src/asap/models/recurrent.py
src/asap/models/vanilla_cnn.py
src/asap/models/xlstm.py
src/asap/models/layers/__init__.py
src/asap/models/layers/convnext.py
src/asap/models/layers/grn.py
src/asap/models/layers/rope.py
src/asap/models/layers/rope_new.py
src/asap/models/layers/unmap_predictor.py
src/asap/snv/__init__.py
src/asap/snv/data_loader.py
src/asap/snv/filter_snvs.py
src/asap/snv/plot_FC_scatter.py
src/asap/snv/plot_PCC_vs_reads.py
src/asap/snv/predict.py
src/asap/trainer/__init__.py
src/asap/trainer/trainer.py
src/asap/utils/logger.py
src/asap/utils/metrics.py
src/asap/utils/optim.py
src/atac_asap.egg-info/PKG-INFO
src/atac_asap.egg-info/SOURCES.txt
src/atac_asap.egg-info/dependency_links.txt
src/atac_asap.egg-info/requires.txt
src/atac_asap.egg-info/top_level.txt