.gitignore
.pre-commit-config.yaml
LICENSE
README.md
conda_config.yml
pyproject.toml
.github/workflows/deploy.yml
.github/workflows/docs.yml
.github/workflows/test.yml
docs/Makefile
docs/source/conf.py
docs/source/editing.rst
docs/source/getting_started.rst
docs/source/index.rst
docs/source/key_bindings.rst
docs/source/motile.rst
docs/source/tree_view.rst
docs/source/images/add_edge.png
docs/source/images/add_node.png
docs/source/images/break_edge.png
docs/source/images/delete_node.png
docs/source/images/results_demo_720p.mp4
scripts/create_sample_dataset.py
scripts/hela_example_tracks.csv
scripts/run_darts_tube.py
scripts/run_hela.py
scripts/test_edge_selection.py
scripts/view_external_tracks.py
scripts/configs/darts/210214_salmonella_single_tube.yaml
scripts/configs/darts/220510_bsub_degron_rap_single_tube.yaml
src/motile_plugin/__init__.py
src/motile_plugin/example_data.py
src/motile_plugin/napari.yaml
src/motile_plugin.egg-info/PKG-INFO
src/motile_plugin.egg-info/SOURCES.txt
src/motile_plugin.egg-info/dependency_links.txt
src/motile_plugin.egg-info/entry_points.txt
src/motile_plugin.egg-info/requires.txt
src/motile_plugin.egg-info/top_level.txt
src/motile_plugin/application_menus/__init__.py
src/motile_plugin/application_menus/editing_menu.py
src/motile_plugin/application_menus/main_app.py
src/motile_plugin/application_menus/menu_widget.py
src/motile_plugin/data_model/__init__.py
src/motile_plugin/data_model/action_history.py
src/motile_plugin/data_model/actions.py
src/motile_plugin/data_model/node_type.py
src/motile_plugin/data_model/solution_tracks.py
src/motile_plugin/data_model/tracks.py
src/motile_plugin/data_model/tracks_controller.py
src/motile_plugin/data_views/__init__.py
src/motile_plugin/data_views/views/__init__.py
src/motile_plugin/data_views/views/layers/__init__.py
src/motile_plugin/data_views/views/layers/track_graph.py
src/motile_plugin/data_views/views/layers/track_labels.py
src/motile_plugin/data_views/views/layers/track_points.py
src/motile_plugin/data_views/views/layers/tracks_layer_group.py
src/motile_plugin/data_views/views/tree_view/__init__.py
src/motile_plugin/data_views/views/tree_view/navigation_widget.py
src/motile_plugin/data_views/views/tree_view/tree_view_feature_widget.py
src/motile_plugin/data_views/views/tree_view/tree_view_mode_widget.py
src/motile_plugin/data_views/views/tree_view/tree_widget.py
src/motile_plugin/data_views/views/tree_view/tree_widget_utils.py
src/motile_plugin/data_views/views_coordinator/__init__.py
src/motile_plugin/data_views/views_coordinator/node_selection_list.py
src/motile_plugin/data_views/views_coordinator/tracks_list.py
src/motile_plugin/data_views/views_coordinator/tracks_viewer.py
src/motile_plugin/motile/backend/__init__.py
src/motile_plugin/motile/backend/motile_run.py
src/motile_plugin/motile/backend/solve.py
src/motile_plugin/motile/backend/solver_params.py
src/motile_plugin/motile/menus/__init__.py
src/motile_plugin/motile/menus/motile_widget.py
src/motile_plugin/motile/menus/param_values.py
src/motile_plugin/motile/menus/params_editor.py
src/motile_plugin/motile/menus/params_viewer.py
src/motile_plugin/motile/menus/run_editor.py
src/motile_plugin/motile/menus/run_viewer.py
src/motile_plugin/utils/load_tracks.py
src/motile_plugin/utils/relabel_segmentation.py
tests/conftest.py
tests/data_model/test_action_history.py
tests/data_model/test_actions.py
tests/data_model/test_solution_tracks.py
tests/data_model/test_tracks.py
tests/data_model/test_tracks_controller.py
tests/motile/backend/test_motile_run.py
tests/motile/backend/test_solver.py
tests/motile_plugin/utils/test_tree_widget_utils.py