.gitignore
.readthedocs.yaml
LICENSE
README.rst
environment.yml
pyproject.toml
.github/workflows/run_test.yml
docs/annotations.rst
docs/api.rst
docs/conf.py
docs/index.rst
docs/tutorials.rst
docs/images/logo.png
docs/images/tutorials_1_-_Read_data_and_get_betas_16_0.png
docs/images/tutorials_3_-_Calculate_DMP_and_DMR_15_0.png
docs/images/tutorials_3_-_Calculate_DMP_and_DMR_17_1.png
docs/images/tutorials_4_-_Copy_Number_Variation_9_0.png
docs/templates/custom-class-template.rst
docs/templates/custom-method-template.rst
docs/templates/custom-module-template.rst
docs/tutorials/1 - Read data and get betas.ipynb
docs/tutorials/2 - QC.ipynb
docs/tutorials/3 - DMPs and DMRs.ipynb
docs/tutorials/4 - Copy Number Variation.ipynb
docs/tutorials/5 - Pathway analysis.ipynb
pylluminator/__init__.py
pylluminator/annotations.py
pylluminator/cnv.py
pylluminator/dm.py
pylluminator/mask.py
pylluminator/ml.py
pylluminator/quality_control.py
pylluminator/read_idat.py
pylluminator/sample_sheet.py
pylluminator/samples.py
pylluminator/stats.py
pylluminator/utils.py
pylluminator/visualizations.py
pylluminator.egg-info/PKG-INFO
pylluminator.egg-info/SOURCES.txt
pylluminator.egg-info/dependency_links.txt
pylluminator.egg-info/requires.txt
pylluminator.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/test_annotations.py
tests/test_betas.py
tests/test_cnv.py
tests/test_dm.py
tests/test_mask.py
tests/test_preprocessing.py
tests/test_qc.py
tests/test_read_samples.py
tests/test_sample_sheet.py
tests/test_samples.py
tests/test_stats.py
tests/test_utils.py
tests/test_visualizations.py