Metadata-Version: 2.4
Name: suvtk
Version: 0.1.5
Summary: Tool to submit viral sequences to Genbank.
Author: Lander De Coninck
License: Apache-2.0
Project-URL: Homepage, https://github.com/LanderDC/suvtk
Project-URL: Changelog, https://github.com/LanderDC/suvtk/releases
Project-URL: Issues, https://github.com/LanderDC/suvtk/issues
Project-URL: CI, https://github.com/LanderDC/suvtk/actions
Classifier: License :: OSI Approved :: Apache Software License
Requires-Python: >=3.9
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: biopython>=1.83
Requires-Dist: click
Requires-Dist: numpy>1.24.4
Requires-Dist: pandas>=2.0.3
Requires-Dist: pyrodigal-gv>=0.3.2
Requires-Dist: requests>=2.32.3
Requires-Dist: scipy>=1.13.1
Requires-Dist: taxopy>=0.14.0
Provides-Extra: test
Requires-Dist: pytest; extra == "test"
Dynamic: license-file

# suvtk (Submission of Uncultivated Viral genomes toolkit)

[![Changelog](https://img.shields.io/github/v/release/LanderDC/suvtk?include_prereleases&label=release&color=purple&logo=github)](https://github.com/LanderDC/suvtk/releases)
[![PyPI](https://img.shields.io/pypi/v/suvtk.svg?color=blue&logo=python)](https://pypi.org/project/suvtk/)
[![Bioconda](https://img.shields.io/conda/v/bioconda/suvtk?label=bioconda&labelColor=grey&color=brightgreen&logo=anaconda)](https://bioconda.github.io/recipes/suvtk/README.html)
[![Tests](https://github.com/LanderDC/suvtk/actions/workflows/test.yml/badge.svg)](https://github.com/LanderDC/suvtk/actions/workflows/test.yml)
[![License](https://img.shields.io/github/license/LanderDC/suvtk?color=blue)](https://github.com/LanderDC/suvtk/blob/master/LICENSE)

Tool to submit viral sequences to Genbank.

## Documentation

Documentation for the tool (including installation instruction) is available <a href="https://landerdc.github.io/suvtk/" target="_blank">here</a>.

## Usage

For help, run:
```bash
suvtk --help
```
You can also use:
```bash
python -m suvtk --help
```
## Development

To contribute to this tool, first checkout the code. Then create a new virtual environment:
```bash
cd suvtk
python -m venv venv
source venv/bin/activate
```
Now install the dependencies and test dependencies:
```bash
pip install -e '.[test]'
```
To run the tests:
```bash
python -m pytest
```
