LICENSE
README.md
pyproject.toml
src/boltz/__init__.py
src/boltz/main.py
src/boltz/data/__init__.py
src/boltz/data/const.py
src/boltz/data/mol.py
src/boltz/data/pad.py
src/boltz/data/types.py
src/boltz/data/crop/__init__.py
src/boltz/data/crop/affinity.py
src/boltz/data/crop/boltz.py
src/boltz/data/crop/cropper.py
src/boltz/data/feature/__init__.py
src/boltz/data/feature/featurizer.py
src/boltz/data/feature/featurizerv2.py
src/boltz/data/feature/symmetry.py
src/boltz/data/filter/__init__.py
src/boltz/data/filter/dynamic/__init__.py
src/boltz/data/filter/dynamic/date.py
src/boltz/data/filter/dynamic/filter.py
src/boltz/data/filter/dynamic/max_residues.py
src/boltz/data/filter/dynamic/resolution.py
src/boltz/data/filter/dynamic/size.py
src/boltz/data/filter/dynamic/subset.py
src/boltz/data/filter/static/__init__.py
src/boltz/data/filter/static/filter.py
src/boltz/data/filter/static/ligand.py
src/boltz/data/filter/static/polymer.py
src/boltz/data/module/__init__.py
src/boltz/data/module/inference.py
src/boltz/data/module/inferencev2.py
src/boltz/data/module/training.py
src/boltz/data/module/trainingv2.py
src/boltz/data/msa/__init__.py
src/boltz/data/msa/mmseqs2.py
src/boltz/data/parse/__init__.py
src/boltz/data/parse/a3m.py
src/boltz/data/parse/csv.py
src/boltz/data/parse/fasta.py
src/boltz/data/parse/mmcif.py
src/boltz/data/parse/mmcif_with_constraints.py
src/boltz/data/parse/pdb.py
src/boltz/data/parse/pdb_download.py
src/boltz/data/parse/schema.py
src/boltz/data/parse/sdf.py
src/boltz/data/parse/yaml.py
src/boltz/data/sample/__init__.py
src/boltz/data/sample/cluster.py
src/boltz/data/sample/distillation.py
src/boltz/data/sample/random.py
src/boltz/data/sample/sampler.py
src/boltz/data/tokenize/__init__.py
src/boltz/data/tokenize/boltz.py
src/boltz/data/tokenize/boltz2.py
src/boltz/data/tokenize/tokenizer.py
src/boltz/data/write/__init__.py
src/boltz/data/write/mmcif.py
src/boltz/data/write/pdb.py
src/boltz/data/write/utils.py
src/boltz/data/write/writer.py
src/boltz/model/__init__.py
src/boltz/model/layers/__init__.py
src/boltz/model/layers/attention.py
src/boltz/model/layers/attentionv2.py
src/boltz/model/layers/confidence_utils.py
src/boltz/model/layers/dropout.py
src/boltz/model/layers/initialize.py
src/boltz/model/layers/outer_product_mean.py
src/boltz/model/layers/pair_averaging.py
src/boltz/model/layers/pairformer.py
src/boltz/model/layers/relative.py
src/boltz/model/layers/transition.py
src/boltz/model/layers/triangular_mult.py
src/boltz/model/layers/triangular_attention/__init__.py
src/boltz/model/layers/triangular_attention/attention.py
src/boltz/model/layers/triangular_attention/primitives.py
src/boltz/model/layers/triangular_attention/utils.py
src/boltz/model/loss/__init__.py
src/boltz/model/loss/bfactor.py
src/boltz/model/loss/confidence.py
src/boltz/model/loss/confidencev2.py
src/boltz/model/loss/diffusion.py
src/boltz/model/loss/diffusionv2.py
src/boltz/model/loss/distogram.py
src/boltz/model/loss/distogramv2.py
src/boltz/model/loss/validation.py
src/boltz/model/models/__init__.py
src/boltz/model/models/boltz1.py
src/boltz/model/models/boltz2.py
src/boltz/model/modules/__init__.py
src/boltz/model/modules/affinity.py
src/boltz/model/modules/confidence.py
src/boltz/model/modules/confidence_utils.py
src/boltz/model/modules/confidencev2.py
src/boltz/model/modules/diffusion.py
src/boltz/model/modules/diffusion_conditioning.py
src/boltz/model/modules/diffusionv2.py
src/boltz/model/modules/encoders.py
src/boltz/model/modules/encodersv2.py
src/boltz/model/modules/transformers.py
src/boltz/model/modules/transformersv2.py
src/boltz/model/modules/trunk.py
src/boltz/model/modules/trunkv2.py
src/boltz/model/modules/utils.py
src/boltz/model/optim/__init__.py
src/boltz/model/optim/ema.py
src/boltz/model/optim/scheduler.py
src/boltz/model/potentials/__init__.py
src/boltz/model/potentials/potentials.py
src/boltz/model/potentials/schedules.py
src/boltz/utils/sdf_splitter.py
src/boltz/utils/yaml_generator.py
src/boltz_vsynthes.egg-info/PKG-INFO
src/boltz_vsynthes.egg-info/SOURCES.txt
src/boltz_vsynthes.egg-info/dependency_links.txt
src/boltz_vsynthes.egg-info/entry_points.txt
src/boltz_vsynthes.egg-info/requires.txt
src/boltz_vsynthes.egg-info/top_level.txt
tests/test_kernels.py
tests/test_regression.py
tests/test_utils.py