README.md
setup.py
phylopypruner/__init__.py
phylopypruner/__main__.py
phylopypruner/decontamination.py
phylopypruner/fasta.py
phylopypruner/filtering.py
phylopypruner/gene_partition.py
phylopypruner/log.py
phylopypruner/mask_monophylies.py
phylopypruner/msa.py
phylopypruner/newick.py
phylopypruner/plot.py
phylopypruner/prune_paralogs.py
phylopypruner/report.py
phylopypruner/root.py
phylopypruner/sequence.py
phylopypruner/settings.py
phylopypruner/summary.py
phylopypruner/supermatrix.py
phylopypruner/taxonomic_groups.py
phylopypruner/tree_node.py
phylopypruner/tree_stats.py
phylopypruner.egg-info/PKG-INFO
phylopypruner.egg-info/SOURCES.txt
phylopypruner.egg-info/dependency_links.txt
phylopypruner.egg-info/top_level.txt
scripts/phylopypruner