# syntax=docker/dockerfile:1

FROM python:3.12-slim

LABEL org.opencontainers.image.source=https://github.com/juaml/junifer
LABEL org.opencontainers.image.description="Junifer CI container image"
LABEL org.opencontainers.image.licenses=AGPL-3.0-only

RUN apt-get update && \
    apt-get install -y \
    pkg-config \
    gcc \
    git \
    make \
    curl \
    # ANTs runtime stuff
    libhdf5-dev \
    bc \
    # AFNI runtime stuff
    libf2c2-dev \
    libglew-dev \
    libglib2.0-dev \
    libglu1-mesa-dev \
    libglw1-mesa-dev \
    libgsl-dev \
    libgts-dev \
    libjpeg62-turbo-dev \
    libmotif-dev \
    libxi-dev \
    libxmhtml-dev \
    libxmu-dev \
    libxpm-dev \
    libxt-dev \
    netpbm \
    libjpeg-progs \
    qhull-bin \
    r-base \
    tcsh \
    xvfb \
    # FSL runtime stuff
    file \
    dc \
    libquadmath0 \
    libgomp1 \
    && rm -rf /var/lib/apt/lists/*

# Add junifer-data
COPY --from=ghcr.io/juaml/junifer-data:v3 /opt/junifer-data /root/junifer_data/v3

# Add ANTs
COPY --from=antsx/ants:latest /opt/ants /opt/ants
# Set env vars for ANTs
ENV PATH="/opt/ants/bin:$PATH" \
    LD_LIBRARY_PATH="/opt/ants/lib"

# Add AFNI
COPY --from=afni/afni_make_build:latest /opt/afni/install /opt/afni/bin
# Set env vars for AFNI
ENV PATH="/opt/afni/bin:$PATH"
# Patch gsl
RUN ln -s /usr/lib/x86_64-linux-gnu/libgsl.so.27 /usr/lib/x86_64-linux-gnu/libgsl.so.23

# Add FSL
RUN curl https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/fslinstaller.py | \
    python - -d /opt/fsl/ --skip_registration
# Set env vars for FSL
ENV FSLDIR=/opt/fsl \
    FSLOUTPUTTYPE=NIFTI_GZ \
    PATH="/opt/fsl/share/fsl/bin:$PATH"

# Clean apt cache
RUN apt-get autoremove --purge && apt-get clean
