LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
examples/connected_pathways/connected_pathways.py
examples/connected_pathways/plot_connected_pathways.py
examples/drainage_inkbottle/drainage_inkbottle.py
examples/drainage_inkbottle/plot_drainage_inkbottle.py
examples/md_porous_media/example_membrane_data.in
examples/md_porous_media/md_porous_media.py
examples/md_porous_media/plot_md_porous_media.py
examples/md_porous_media/rdf_bins/BC1.rdf
examples/md_porous_media/rdf_bins/BC2.rdf
examples/md_porous_media/rdf_bins/BC3.rdf
examples/md_porous_media/rdf_bins/BC4.rdf
examples/md_porous_media/rdf_bins/BC5.rdf
examples/md_porous_media/rdf_bins/BH1.rdf
examples/md_porous_media/rdf_bins/BH2.rdf
examples/md_porous_media/rdf_bins/BH3.rdf
examples/md_porous_media/rdf_bins/C_CONH.rdf
examples/md_porous_media/rdf_bins/C_COOH.rdf
examples/md_porous_media/rdf_bins/H_CONH.rdf
examples/md_porous_media/rdf_bins/H_COOH.rdf
examples/md_porous_media/rdf_bins/N_CONH.rdf
examples/md_porous_media/rdf_bins/N_NH.rdf
examples/md_porous_media/rdf_bins/O_CONH.rdf
examples/md_porous_media/rdf_bins/O_COOH.rdf
examples/md_porous_media/rdf_bins/atom_map.txt
examples/sphere_pack_psd/plot_sphere_pack_psd.py
examples/sphere_pack_psd/sphere_pack.in
examples/sphere_pack_psd/sphere_pack_psd.py
src/pmmoto/__init__.py
src/pmmoto.egg-info/PKG-INFO
src/pmmoto.egg-info/SOURCES.txt
src/pmmoto.egg-info/dependency_links.txt
src/pmmoto.egg-info/requires.txt
src/pmmoto.egg-info/top_level.txt
src/pmmoto/analysis/__init__.py
src/pmmoto/analysis/_bins.cpp
src/pmmoto/analysis/_bins.pyi
src/pmmoto/analysis/_bins.pyx
src/pmmoto/analysis/_minkowski.c
src/pmmoto/analysis/_minkowski.pyi
src/pmmoto/analysis/_minkowski.pyx
src/pmmoto/analysis/average.py
src/pmmoto/analysis/bins.hpp
src/pmmoto/analysis/bins.pxd
src/pmmoto/analysis/bins.py
src/pmmoto/analysis/minkowski.py
src/pmmoto/analysis/minkowskic.c
src/pmmoto/analysis/minkowskic.h
src/pmmoto/analysis/quantimpyc.c
src/pmmoto/analysis/quantimpyc.h
src/pmmoto/analysis/stats.py
src/pmmoto/core/__init__.py
src/pmmoto/core/_voxels.cpp
src/pmmoto/core/_voxels.hpp
src/pmmoto/core/_voxels.pxd
src/pmmoto/core/_voxels.pyi
src/pmmoto/core/_voxels.pyx
src/pmmoto/core/boundary_types.py
src/pmmoto/core/communication.py
src/pmmoto/core/domain.py
src/pmmoto/core/domain_decompose.py
src/pmmoto/core/domain_discretization.py
src/pmmoto/core/features.py
src/pmmoto/core/logging.py
src/pmmoto/core/orientation.py
src/pmmoto/core/pmmoto.py
src/pmmoto/core/subdomain.py
src/pmmoto/core/subdomain_features.py
src/pmmoto/core/subdomain_padded.py
src/pmmoto/core/subdomain_verlet.py
src/pmmoto/core/utils.py
src/pmmoto/core/voxels.py
src/pmmoto/domain_generation/__init__.py
src/pmmoto/domain_generation/_domain_generation.cpp
src/pmmoto/domain_generation/_domain_generation.pxd
src/pmmoto/domain_generation/_domain_generation.pyi
src/pmmoto/domain_generation/_domain_generation.pyx
src/pmmoto/domain_generation/_rdf.cpp
src/pmmoto/domain_generation/_rdf.pxd
src/pmmoto/domain_generation/_rdf.pyi
src/pmmoto/domain_generation/_rdf.pyx
src/pmmoto/domain_generation/domain_generation.hpp
src/pmmoto/domain_generation/domain_generation.py
src/pmmoto/domain_generation/lattice_packings.py
src/pmmoto/domain_generation/multiphase.py
src/pmmoto/domain_generation/porousmedia.py
src/pmmoto/domain_generation/rdf.hpp
src/pmmoto/domain_generation/rdf.pxd
src/pmmoto/domain_generation/rdf.py
src/pmmoto/filters/__init__.py
src/pmmoto/filters/connected_components.py
src/pmmoto/filters/equilibrium_distribution.py
src/pmmoto/filters/morphological_operators.py
src/pmmoto/filters/porosimetry.py
src/pmmoto/filters/distance/__init__.py
src/pmmoto/filters/distance/_distance.cpp
src/pmmoto/filters/distance/_distance.hpp
src/pmmoto/filters/distance/_distance.pxd
src/pmmoto/filters/distance/_distance.pyi
src/pmmoto/filters/distance/_distance.pyx
src/pmmoto/filters/distance/edt.py
src/pmmoto/filters/distance/threadpool.h
src/pmmoto/io/__init__.py
src/pmmoto/io/_dataOutput.pyx
src/pmmoto/io/_data_read.cpp
src/pmmoto/io/_data_read.pxd
src/pmmoto/io/_data_read.pyi
src/pmmoto/io/_data_read.pyx
src/pmmoto/io/data_read.hpp
src/pmmoto/io/data_read.py
src/pmmoto/io/io_utils.py
src/pmmoto/io/output.py
src/pmmoto/io/evtk/__init__.py
src/pmmoto/io/evtk/evtk.py
src/pmmoto/io/evtk/hl.py
src/pmmoto/io/evtk/vtk.py
src/pmmoto/io/evtk/xml.py
src/pmmoto/particles/KDTreeVectorOfVectorsAdaptor.h
src/pmmoto/particles/__init__.py
src/pmmoto/particles/_particles.cpp
src/pmmoto/particles/_particles.pxd
src/pmmoto/particles/_particles.pyi
src/pmmoto/particles/_particles.pyx
src/pmmoto/particles/atom_universal_force_field.py
src/pmmoto/particles/atoms.hpp
src/pmmoto/particles/atoms.pxd
src/pmmoto/particles/cylinders.hpp
src/pmmoto/particles/cylinders.pxd
src/pmmoto/particles/kd_tree.hpp
src/pmmoto/particles/nanoflann.hpp
src/pmmoto/particles/particle_list.hpp
src/pmmoto/particles/particle_list.pxd
src/pmmoto/particles/particles.py
src/pmmoto/particles/shape.hpp
src/pmmoto/particles/shape.pxd
src/pmmoto/particles/spheres.hpp
src/pmmoto/particles/spheres.pxd