LICENSE
MANIFEST.in
README.md
pyproject.toml
external/ANARCI/src/ANARCI/__init__.py
external/ANARCI/src/ANARCI/anarci.py
external/ANARCI/src/ANARCI/schemes.py
external/ANARCI/src/ANARCI/__pycache__/__init__.cpython-310.pyc
external/ANARCI/src/ANARCI/__pycache__/anarci.cpython-310.pyc
external/ANARCI/src/ANARCI/__pycache__/schemes.cpython-310.pyc
external/SoftAlign/softalign/ENCODING.py
external/SoftAlign/softalign/END_TO_END_MODELS.py
external/SoftAlign/softalign/Input_MPNN.py
external/SoftAlign/softalign/LDDT_LOSS.py
external/SoftAlign/softalign/Loss_functions.py
external/SoftAlign/softalign/MPNN.py
external/SoftAlign/softalign/SW.py
external/SoftAlign/softalign/Score_align.py
external/SoftAlign/softalign/__init__.py
external/SoftAlign/softalign/search.py
external/SoftAlign/softalign/utils.py
external/SoftAlign/softalign/__pycache__/END_TO_END_MODELS.cpython-310.pyc
external/SoftAlign/softalign/__pycache__/END_TO_END_MODELS.cpython-311.pyc
external/SoftAlign/softalign/__pycache__/Input_MPNN.cpython-310.pyc
external/SoftAlign/softalign/__pycache__/Input_MPNN.cpython-311.pyc
external/SoftAlign/softalign/__pycache__/MPNN.cpython-310.pyc
external/SoftAlign/softalign/__pycache__/MPNN.cpython-311.pyc
external/SoftAlign/softalign/__pycache__/SW.cpython-310.pyc
external/SoftAlign/softalign/__pycache__/SW.cpython-311.pyc
external/SoftAlign/softalign/__pycache__/__init__.cpython-310.pyc
external/SoftAlign/softalign/__pycache__/__init__.cpython-311.pyc
external/SoftAlign/softalign/models/CONT_SFT_06_T_3_1
external/SoftAlign/softalign/models/CONT_SW_05_T_3_1
sabr_kit.egg-info/PKG-INFO
sabr_kit.egg-info/SOURCES.txt
sabr_kit.egg-info/dependency_links.txt
sabr_kit.egg-info/entry_points.txt
sabr_kit.egg-info/requires.txt
sabr_kit.egg-info/top_level.txt
src/sabr/__init__.py
src/sabr/aln2hmm.py
src/sabr/cli.py
src/sabr/constants.py
src/sabr/edit_pdb.py
src/sabr/ops.py
src/sabr/softaligner.py
src/sabr/types.py
src/sabr/assets/embeddings.npz
tests/test_types.py