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.gitignore
LICENSE
MANIFEST.in
README.md
mkdocs.yml
pyproject.toml
requirements.txt
requirements_dev.txt
toomanycells_demo.ipynb
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/config.yml
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/docs-build.yml
.github/workflows/docs.yml
.github/workflows/installation.yml
.github/workflows/macos.yml
.github/workflows/pypi.yml
.github/workflows/ubuntu.yml
.github/workflows/windows.yml
docs/changelog.md
docs/common.md
docs/contributing.md
docs/faq.md
docs/index.md
docs/installation.md
docs/toomanycells.md
docs/usage.md
docs/examples/intro.ipynb
docs/overrides/main.html
tests/4plex_cd9_exp.svg
tests/4plex_cd9_exp_full.svg
tests/4plex_data.svg
tests/4plex_data_full.svg
tests/4plex_data_full_2_branches.svg
tests/4plex_data_full_marker_class.svg
tests/4plex_sdc1_exp_full.svg
tests/__init__.py
tests/benchmark.py
tests/benchmark_table.csv
tests/benchmark_table_mod.csv
tests/branch_A.svg
tests/branch_B.svg
tests/counter_node_modularity.svg
tests/example_1.png
tests/exp_path.png
tests/exp_path_test.svg
tests/heterogeneity.svg
tests/log_benchmark_table.csv
tests/log_linear_iter.png
tests/log_linear_time.png
tests/plot_linear_model_for_iter.py
tests/plot_linear_model_for_time.py
tests/tabula_sapiens_time.png
tests/test_toomanycells.py
tests/tmci_tabula_sapiens.png
tests/tree_path_example.svg
tests/marker_nodal_distribution/cd9_nodal_distribution_homemade.png
tests/marker_nodal_distribution/cd9_nodal_distribution_tmci.png
tests/marker_nodal_distribution/index.html
tests/marker_nodal_distribution/sdc1_nodal_distribution_homemade.png
toomanycells/__init__.py
toomanycells/cellAnnotation.py
toomanycells/common.py
toomanycells/multiPlotter.py
toomanycells/similarityMatrix.py
toomanycells/tmcGraph.py
toomanycells/tmcHaskell.py
toomanycells/toomanycells.py
toomanycells.egg-info/PKG-INFO
toomanycells.egg-info/SOURCES.txt
toomanycells.egg-info/dependency_links.txt
toomanycells.egg-info/entry_points.txt
toomanycells.egg-info/requires.txt
toomanycells.egg-info/top_level.txt
toomanycells/data/metadata.csv