.coveragerc
.gitignore
.pre-commit-config.yaml
.readthedocs.yaml
LICENSE
README.md
pyproject.toml
.github/ISSUE_TEMPLATE/bug-report.yaml
.github/ISSUE_TEMPLATE/feature-request.yaml
.github/workflows/checks.yaml
.github/workflows/pr-priority-label.yaml
.github/workflows/release.yml
.github/workflows/stale.yaml
docs/Makefile
docs/make.bat
docs/source/changelog.rst
docs/source/conf.py
docs/source/contributing.rst
docs/source/data_model.rst
docs/source/index.rst
docs/source/install.rst
docs/source/license.rst
docs/source/usage.rst
docs/source/_templates/module_summary.rst
docs/source/reference/index.rst
docs/source/reference/api/fusor.exceptions.rst
docs/source/reference/api/fusor.fusion_caller_models.rst
docs/source/reference/api/fusor.fusor.rst
docs/source/reference/api/fusor.harvester.rst
docs/source/reference/api/fusor.models.rst
docs/source/reference/api/fusor.nomenclature.rst
docs/source/reference/api/fusor.tools.rst
docs/source/reference/api/fusor.translator.rst
notebooks/README.md
notebooks/evidence_matching/civic_cache.pkl
notebooks/evidence_matching/fusion_evidence_matching.ipynb
notebooks/evidence_matching/moalmanac_20250612.json
notebooks/evidence_matching/requirements.txt
scripts/generate_examples.py
src/fusor/__init__.py
src/fusor/config.py
src/fusor/exceptions.py
src/fusor/fusion_caller_models.py
src/fusor/fusion_matching.py
src/fusor/fusor.py
src/fusor/harvester.py
src/fusor/models.py
src/fusor/nomenclature.py
src/fusor/tools.py
src/fusor/translator.py
src/fusor.egg-info/PKG-INFO
src/fusor.egg-info/SOURCES.txt
src/fusor.egg-info/dependency_links.txt
src/fusor.egg-info/requires.txt
src/fusor.egg-info/top_level.txt
src/fusor/examples/README.md
src/fusor/examples/__init__.py
src/fusor/examples/alk.json
src/fusor/examples/bcr_abl1.json
src/fusor/examples/bcr_abl1_expanded.json
src/fusor/examples/ewsr1.json
src/fusor/examples/ewsr1_elements_only.json
src/fusor/examples/ewsr1_no_assay.json
src/fusor/examples/ewsr1_no_causative_event.json
src/fusor/examples/igh_myc.json
src/fusor/examples/tpm3_ntrk1.json
src/fusor/examples/tpm3_pdgfrb.json
tests/conftest.py
tests/fusion_matching_test_cases.yaml
tests/test_fusion_matching.py
tests/test_fusor.py
tests/test_harvesters.py
tests/test_models.py
tests/test_nomenclature.py
tests/test_tools.py
tests/test_translators.py
tests/data/dynamodb_local_latest/dynamodb_build.bash
tests/data/dynamodb_local_latest/shared-local-instance.db
tests/data/seqrepo/latest/aliases.sqlite3
tests/data/seqrepo/latest/sequences/db.sqlite3
tests/fixtures/annotated.fusion.txt
tests/fixtures/enfusion_test.csv
tests/fixtures/final-list_candidate-fusion-genes.txt
tests/fixtures/fusion_catcher_test.txt
tests/fixtures/fusions_arriba_test.tsv
tests/fixtures/genie_test.txt
tests/fixtures/jaffa_results.csv
tests/fixtures/jaffa_results_test.csv
tests/fixtures/star-fusion.fusion_predictions.abridged.tsv
tests/fixtures/star_fusion_test.tsv
tests/fixtures/test_civic_cache.pkl