Gene_1_symbol(5end_fusion_partner)	Gene_2_symbol(3end_fusion_partner)	Fusion_description	Counts_of_common_mapping_reads	Spanning_pairs	Spanning_unique_reads	Longest_anchor_found	Fusion_finding_method	Fusion_point_for_gene_1(5end_fusion_partner)	Fusion_point_for_gene_2(3end_fusion_partner)	Gene_1_id(5end_fusion_partner)	Gene_2_id(3end_fusion_partner)	Exon_1_id(5end_fusion_partner)	Exon_2_id(3end_fusion_partner)	Fusion_sequence	Predicted_effect
ALK	EML4	known,similar_reads,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,cell_lines,ambiguous,18cancers,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,m543,tcga-cancer	39165	545	4	36	BOWTIE+BLAT	2:29223427:-	2:42295181:+	ENSG00000171094	ENSG00000143924			CCCTGAGTACAAGCTGAGCAAGCTCCGCACCTCGACCATCATGACCGACT*AATTACATGCGGTAAATCTCATATTTTCTTCTGGACCTGGAGCGGCAATT	out-of-frame
EML4	ALK	known,similar_reads,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,cell_lines,ambiguous,18cancers,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,m543,tcga-cancer,exon-exon	39165	545	27	30	BOWTIE;BOWTIE+STAR	2:42295516:+	2:29223528:-	ENSG00000143924	ENSG00000171094	ENSE00003554806	ENSE00001154407	AGCAAAACTACTGTAGAGCCCACACCTGGGAAAGGACCTAAAG*TGTACCGCCGGAAGCACCAGGAGCTGCAAGCCATGCAGATGGA	in-frame
EML4	ALK	known,similar_reads,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,cell_lines,ambiguous,18cancers,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,m543,tcga-cancer	39165	545	2	32	BOWTIE+STAR	2:42235381:+	2:29790679:-	ENSG00000143924	ENSG00000171094			CACCTGTAATCCCAGCTACTCAGGAGGCTAAGGCGCGAGAATTACTTGAG*CCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGTGCCATTGCATTCCAG	intronic/intronic
EML4	ALK	known,similar_reads,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,cell_lines,ambiguous,18cancers,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,m543,tcga-cancer	39165	545	2	19	BOWTIE+STAR	2:42177812:+	2:29286943:-	ENSG00000143924	ENSG00000171094			TGTGCATGACCTGTTAATGGTTTTTGAAATCAGTTTAGTCGTGGTCAGGA*AAAAAAAAAAAAAAATGAGATGGTGTGTCACAGACTAAGTCAAGGAATAT	intronic/intronic
KIF5B	RET	known,oncogene,cosmic,cgp,ticdb,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,exon-exon	0	505	27	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	10:32017143:-	10:43114480:+	ENSG00000170759	ENSG00000165731	ENSE00001163712	ENSE00001164787	AGGTCAAAGAATATGGCCAGAAGAGGGCATTCTGCACAGATTG*ATCCACTGTGCGACGAGCTGTGCCGCACGGTGATCGCAGCCGC	in-frame
RET	KIF5B	known,oncogene,cosmic,cgp,ticdb,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor	0	505	2	33	BOWTIE+BLAT;BOWTIE+STAR	10:43114611:+	10:32017241:-	ENSG00000165731	ENSG00000170759			CTTCTGCATCCACTGCTACCACAAGTTTGCCCACAAGCCACCCATCTCCT*CATCTCGTGATCGCAAACGCTATCAGCAAGAAGTAGATCGCATAAAGGAA	in-frame
LMNA	NTRK1	known,oncogene,cgp,chimerdb3kb,chimerdb3pub,cancer,tumor,exon-exon	0	476	27	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	1:156130773:+	1:156874906:+	ENSG00000160789	ENSG00000198400	ENSE00003659692	ENSE00003538368	GCTGGAGGGCGAGCTGCATGATCTGCGGGGCCAGGTGGCCAAG*GTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCC	in-frame
FGFR3	TACC3	known,adjacent,oncogene,cosmic,ticdb,tcga,cell_lines,18cancers,gliomas,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tcga-cancer,oesophagus,10K<gap<100K,exon-exon	0	392	27	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	4:1806934:+	4:1739702:+	ENSG00000068078	ENSG00000013810	ENSE00003518612	ENSE00001655127	GGTGGAGGACCTGGACCGTGTCCTTACCGTGACGTCCACCGAC*GTAAAGGCGACACAGGAGGAGAACCGGGAGCTGAGGAGCAGGT	in-frame
NCOA4	RET	known,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,m356,tcga-cancer,exon-exon	0	380	27	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	10:46012883:-	10:43116584:+	ENSG00000266412	ENSG00000165731	ENSE00003670291	ENSE00001095944	CCAGGACTGGCTTACCCAAAAGCAGACCTTGGAGAACAGTCAG*GAGGATCCAAAGTGGGAATTCCCTCGGAAGAACTTGGTTCTTG	in-frame
ETV6	NTRK3	known,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,cell_lines,18cancers,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,tcga-cancer,exon-exon	210	316	27	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	12:11869969:+	15:87940753:-	ENSG00000139083	ENSG00000140538	ENSE00001788162	ENSE00001134154	TCCCCGCCTGAAGAGCACGCCATGCCCATTGGGAGAATAGCAG*ATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGA	in-frame
ETV6	NTRK3	known,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,cell_lines,18cancers,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,tcga-cancer	210	316	2	28	BOWTIE+STAR	12:11663757:+	15:87941485:-	ENSG00000139083	ENSG00000140538			ATATTGTACATTTGAGATAGTTTGCCTGTGGTGTTTATATGTTGGTAGGT*TGTGTGTGTGTGTATGTGTATGTGTGTGTGCATGCGTGTGTCTTGTCTTC	intronic/intronic
NTRK3	ETV6	known,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,cell_lines,18cancers,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,tcga-cancer	210	316	3	40	BOWTIE+STAR	15:87933100:-	12:11869820:+	ENSG00000140538	ENSG00000139083			TTTCCAGAGGGAGGCCGAGCTGCTCACCAACCTGCAGCATGAGCACATTG*TCAAACAGTCCAGGCTCTCCGAGGACGGGCTGCATAGGGAAGGGAAGCCC	in-frame
NTRK3	ETV6	known,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,cell_lines,18cancers,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,tcga-cancer	210	316	2	29	BOWTIE+STAR	15:87933123:-	12:11869914:+	ENSG00000140538	ENSG00000139083			CCCACCCTGGCTGCCCGGAAGGATTTCCAGAGGGAGGCCGAGCTGCTCAC*CATGGTCTCTGTCTCCCCGCCTGAAGAGCACGCCATGCCCATTGGGAGAA	in-frame
TPM3	NTRK1	known,oncogene,cosmic,chimerdb2,cgp,tcga,cell_lines,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,m139,tcga-cancer,exon-exon	0	312	27	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	1:154170400:-	1:156874571:+	ENSG00000143549	ENSG00000198400	ENSE00003479884	ENSE00003559053	AGATCGGTAGCCAAGCTGGAAAAGACAATTGATGACCTGGAAG*ACACTAACAGCACATCTGGAGACCCGGTGGAGAAGAAGGACGA	in-frame
EGFR	SEPT14	known,oncogene,tcga,chimerdb3pub,cancer,tumor,m39,exon-exon	61	228	27	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	7:55200413:+	7:55796092:-	ENSG00000146648	ENSG00000154997	ENSE00001790701	ENSE00001370673	CTCCAAAATGGCCCGAGACCCCCAGCGCTACCTTGTCATTCAG*CTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGG	in-frame
FGFR3	BAIAP2L1	known,oncogene,cosmic,ticdb,cell_lines,chimerdb3kb,chimerdb3pub,cancer,exon-exon	0	219	27	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	4:1806934:+	7:98362432:-	ENSG00000068078	ENSG00000006453	ENSE00003518612	ENSE00003530132	GGTGGAGGACCTGGACCGTGTCCTTACCGTGACGTCCACCGAC*AATGTTATGGAACAGTTCAATCCTGGGCTGCGAAATTTAATAA	in-frame
SLC34A2	ROS1	known,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,cell_lines,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,exon-exon	0	206	26	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	4:25664330:+	6:117324415:-	ENSG00000157765	ENSG00000047936	ENSE00001122648	ENSE00000762702	TGCTCCCTGGATATTCTTAGTAGCGCCTTCCAGCTGGTTGGAG*ATGATTTTTGGATACCAGAAACAAGTTTCATACTTACTATTAT	in-frame
NPIPB5	SMG1	banned,known,bodymap2,hpa,m1,multi	0	201	9	41	BOWTIE+STAR	16:22492287:+	16:18857719:-	ENSG00000243716	ENSG00000157106			GTATATACCACAGTTTATTTCTCCCTTCATCCTTTGCTAGATTTTGGGGT*TTTTTTCACATTGCGCTATTCAGTATAAACCTGCTCTCAACATTCATGTG	intronic/UTR
NPIPB5	SMG1	banned,known,bodymap2,hpa,m1,multi	0	201	5	30	BOWTIE+STAR	16:22520986:+	16:18885016:-	ENSG00000243716	ENSG00000157106			GCCTCAGCCTCCCAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGC*CAATACCATTTCTTTAATAATGCAAGAAAACTAATTCAGAGAAATGTTTT	intronic/UTR
NPIPB5	SMG1	banned,known,bodymap2,hpa,m1,multi	0	201	3	39	BOWTIE+STAR	16:22492410:+	16:18857596:-	ENSG00000243716	ENSG00000157106			TGCGTTTCTCTTGAGTGAATGCACCTTGTTGGGTCACGTGGCTTAACTTA*AAAAAAATTTTAATCACTGTGGTGCATATGTAGTGATTATTAGTGATTAT	intronic/UTR
NPIPB5	SMG1	banned,known,bodymap2,hpa,m1,multi	0	201	2	37	BOWTIE+STAR	16:22493252:+	16:18856754:-	ENSG00000243716	ENSG00000157106			CAAGTATTGATCAAATGTGCTTTGTACCAGGTACTGAGCTCTTCGTTGGG*ATAATGGTGATCAAGGAGATTGTAGATTCTGGCAGGGAAAACTGACATCA	intronic/UTR
NPIPB5	SMG1	banned,known,bodymap2,hpa,m1,multi	0	201	2	31	BOWTIE+STAR	16:22493134:+	16:18856875:-	ENSG00000243716	ENSG00000157106			TTCACAAGTACCCTCATCTCCTTTCCAGTCGTTTTTTGTTTTTGTTTTTG*TTTTTTTTGAGACCATCTCACTCTGTTGCCCAGGCTGGAGTGCCTCTTCA	intronic/UTR
NPIPB5	SMG1	banned,known,bodymap2,hpa,m1,multi,exon-exon	0	201	2	28	BOWTIE	16:22506235:+	16:18879719:-	ENSG00000243716	ENSG00000157106	ENSE00002280067	ENSE00001635363	AGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAG*GTTCTGTACAGAGTAATGAGATGTGTGACGGCTGCAAACCAGG	UTR/CDS(truncated)
NPIPB5	SMG1	banned,known,bodymap2,hpa,m1,multi	0	201	2	25	BOWTIE+BLAT;BOWTIE+STAR	16:22506495:+	16:18857012:-	ENSG00000243716	ENSG00000157106			CGACTGAATGGACCCTTCCTGTTGAGCAAGGACATTCCAAAGTAAACTGA*TTCCCCACTTTTGAGATACTTGTAAGGATTATATGAGATGAAGAGATGAG	intronic/UTR
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi,exon-exon	0	201	22	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	16:18858170:-	16:22513522:+	ENSG00000157106	ENSG00000243716	ENSE00001505919	ENSE00002138288	AGGTATACTATGTACCAGAATCAGTTGTTGGAGAAAATTAAAG*GTATGATCTCGTGAAATCTTGAGAGAAACTGAATGACGAATGA	CDS(truncated)/UTR
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi	0	201	15	39	BOWTIE+BLAT;BOWTIE+STAR	16:18858211:-	16:22513522:+	ENSG00000157106	ENSG00000243716			TTACGTTCATGTAAACAGCATGACGTGAGGCCATGGATGCAGGCATTAAG*GTATGATCTCGTGAAATCTTGAGAGAAACTGAATGACGAATGAAACTATT	CDS(truncated)/UTR
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi	0	201	7	40	BOWTIE+BLAT;BOWTIE+STAR	16:18858211:-	16:22507337:+	ENSG00000157106	ENSG00000243716			TTACGTTCATGTAAACAGCATGACGTGAGGCCATGGATGCAGGCATTAAG*AGCTTGAAATGAATTTTAAAGGATGACTGATGGTCCTTGGAAGAGAAACA	CDS(truncated)/UTR
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi,exon-exon	0	201	6	30	BOWTIE	16:18858170:-	16:22507337:+	ENSG00000157106	ENSG00000243716	ENSE00001505919	ENSE00002285337	AGGTATACTATGTACCAGAATCAGTTGTTGGAGAAAATTAAAG*AGCTTGAAATGAATTTTAAAGGATGACTGATGGTCCTTGGAAG	CDS(truncated)/UTR
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi,exon-exon	0	201	6	29	BOWTIE	16:18858170:-	16:22513523:+	ENSG00000157106	ENSG00000243716	ENSE00001505919	ENSE00002700286	AGGTATACTATGTACCAGAATCAGTTGTTGGAGAAAATTAAAG*TATGATCTCGTGAAATCTTGAGAGAAACTGAATGACGAATGAA	CDS(truncated)/UTR
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi	0	201	3	41	BOWTIE+BLAT;BOWTIE+STAR	16:18858211:-	16:22513424:+	ENSG00000157106	ENSG00000243716			TTACGTTCATGTAAACAGCATGACGTGAGGCCATGGATGCAGGCATTAAG*GTTTCAGGCACAGAACTGTATATCCAATAATAGTGAAATGGATCCCACTA	CDS(truncated)/UTR
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi	0	201	3	35	BOWTIE+BLAT;BOWTIE+STAR	16:18858171:-	16:22523820:+	ENSG00000157106	ENSG00000243716			AGGCATTAAGGTATACTATGTACCAGAATCAGTTGTTGGAGAAAATTAAA*GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACTTTGGTGG	in-frame
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi	0	201	3	32	BOWTIE+BLAT	16:18856886:-	16:22531600:+	ENSG00000157106	ENSG00000243716			AGCGTGTCATATAATATGGCTTCACAAGTACCCTCATCTCCTTTCCAGTC*TTTTTTGTTTTTGTTTTTGTTTTTCTGAGATGGAGTCTCGCTGTGTCACC	UTR/UTR
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi	0	201	3	29	BOWTIE+BLAT	16:18858211:-	16:22506113:+	ENSG00000157106	ENSG00000243716			TTACGTTCATGTAAACAGCATGACGTGAGGCCATGGATGCAGGCATTAAG*ACAGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCA	CDS(truncated)/UTR
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi	0	201	2	36	BOWTIE+STAR	16:18858170:-	16:22510896:+	ENSG00000157106	ENSG00000243716			GGCATTAAGGTATACTATGTACCAGAATCAGTTGTTGGAGAAAATTAAAG*ATTCTACCTTTGTCACCCAGGCGGGAGTGCAGTGGCATGATCTCGGCTCA	CDS(truncated)/intronic
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi	0	201	2	33	BOWTIE+BLAT;BOWTIE+STAR	16:18858211:-	16:22513764:+	ENSG00000157106	ENSG00000243716			TTACGTTCATGTAAACAGCATGACGTGAGGCCATGGATGCAGGCATTAAG*GTTGGCACTCATCATGAGCCCCTGTTCTCATTCTGCAAATGGTGAAGCTC	CDS(truncated)/UTR
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi	0	201	2	30	BOWTIE+STAR	16:18857596:-	16:22492410:+	ENSG00000157106	ENSG00000243716			TGTGTTTCTCTCGAGTGAATGCACCTTGTTGGGTCACGTAGCTTAACTTA*AAAAAAATTTTAATCACTGTGGTGCATATGTAGTGATTATTAGTGATTAT	UTR/intronic
SMG1	NPIPB5	banned,known,bodymap2,hpa,m1,multi,exon-exon	0	201	2	22	BOWTIE	16:18858170:-	16:22523820:+	ENSG00000157106	ENSG00000243716	ENSE00001505919	ENSE00003563471	AGGTATACTATGTACCAGAATCAGTTGTTGGAGAAAATTAAAG*GTTATCAATACTCTGGCTGACCATCATCATCGTGGGACTGACT	in-frame
PAX8	PPARG	known,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tcga-cancer,exon-exon	0	186	27	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	2:113235394:-	3:12379704:+	ENSG00000125618	ENSG00000132170	ENSE00003562615	ENSE00003553746	GCCTCCGTGTACGGGCAGTTCACGGGCCAGGCCCTCCTCTCAG*AAATGACCATGGTTGACACAGAGATGCCATTCTGGCCCACCAA	in-frame
PPARG	PAX8	known,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tcga-cancer	0	186	2	40	BOWTIE+BLAT;BOWTIE+STAR	3:12379852:+	2:113235530:-	ENSG00000132170	ENSG00000125618			ATATCAAGCCCTTCACTACTGTTGACTTCTCCAGCATTTCTACTCCACAT*TAGCTCCACCCCTTCCTCTTTATCTAGCTCCGCCTTTTTGGATCTGCAGC	out-of-frame
AC118758.2	AL606534.6	pseudogene,m3	1174	168	17	41	BOWTIE+STAR	7:56806065:+	1:243050504:+	ENSG00000277253	ENSG00000278455			GCGAGCGGTGGTACACCCTGGGGCCCAATGAGACGCAGAAGTACCATGAC*CTGGCCTTCCAGGTGAAGGTGGCCCACTTGCAACAAGGACCGAAAGAAGT	exonic(no-known-CDS)/exonic(no-known-CDS)
AC118758.2	AL606534.6	pseudogene,m3	1174	168	5	41	BOWTIE+STAR	7:56806526:+	1:243050970:+	ENSG00000277253	ENSG00000278455			GCAGCCCCTGGTGAGGGAGGTGACCAGTGGGCAGCCCTGCTGCTGCCCAC*CTGAGCTGCTCATTCCCAGCACATGGCCGGTGAGGACACAGCGAGTGACG	exonic(no-known-CDS)/exonic(no-known-CDS)
AL606534.6	AC118758.2	pseudogene,m3	1174	168	19	46	BOWTIE+STAR	1:243051299:+	7:56806857:+	ENSG00000278455	ENSG00000277253			GGTCCCCCGATCCACCTGCAGCTTTTGGCAAAGTCTATGGTCCCACCCTG*TCCTCCTCCTACACATACTCGGATGCTTCCTCCTCAACCTTGGCACCCAC	exonic(no-known-CDS)/exonic(no-known-CDS)
AC211429.1	POM121	pseudogene,m3	1680	128	13	40	BOWTIE+STAR	7:75485916:-	7:72879833:+	ENSG00000242073	ENSG00000196313			GTGGACAGGAGGGGACCTCGCGAGCAGACGCGCGCGCCAGCGACAGCAGC*CCCGCCCCGGCCTCTCGGGAGCCGTGGGGCAGAGGCTGCAGAGCCCCAGG	exonic(no-known-CDS)/UTR
AC211429.1	POM121	pseudogene,m3,exon-exon	1680	128	13	29	BOWTIE	7:75484198:-	7:72890627:+	ENSG00000242073	ENSG00000196313	ENSE00002492251	ENSE00002455731	CTCTGCATGTTTCCAAGAGCAGCAGAAAATGAACACATTGCAG*GGGCCAGTGTCATTCAAAGATGTGGCTGTGGATTTCACCCAGG	exonic(no-known-CDS)/UTR
AC211429.1	POM121	pseudogene,m3,exon-exon	1680	128	5	26	BOWTIE	7:75475062:-	7:72890933:+	ENSG00000242073	ENSG00000196313	ENSE00003671850	ENSE00001407696	GGGGATGTGATGTTGGAGAACTACAGCCATCTAGTTTCCTTGG*CTTATGAGGTGGCAACATCTTGTACTTCGGAGATCTGAAGCCG	exonic(no-known-CDS)/UTR
CD74	ROS1	known,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,cell_lines,18cancers,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,tcga-cancer,exon-exon	0	128	25	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	5:150404680:-	6:117324415:-	ENSG00000019582	ENSG00000047936	ENSE00000841201	ENSE00000762702	AGGCACTCCTTGGAGCAAAAGCCCACTGACGCTCCACCGAAAG*ATGATTTTTGGATACCAGAAACAAGTTTCATACTTACTATTAT	in-frame
POM121	AC211429.1	pseudogene,m3,exon-exon	1680	128	10	30	BOWTIE	7:72879885:+	7:75484256:-	ENSG00000196313	ENSG00000242073	ENSE00001404826	ENSE00002492251	CCTCTCGGGAGCCGTGGGGCAGAGGCTGCAGAGCCCCAGGAGG*GTCTATCAGCCACAGTCTCTGCATGTTTCCAAGAGCAGCAGAA	UTR/exonic(no-known-CDS)
POM121	AC211429.1	pseudogene,m3,exon-exon	1680	128	3	30	BOWTIE	7:72891110:+	7:75475188:-	ENSG00000196313	ENSG00000242073	ENSE00001521122	ENSE00003671850	CTGTGGATAACGGGAGGTGAATTTCCATGTCAACATAGTCCAG*GGGCCAGTGTCATTCAAAGATGTGGCTGTGGATTTCACCCAGG	UTR/exonic(no-known-CDS)
ROS1	CD74	known,oncogene,cosmic,chimerdb2,cgp,ticdb,tcga,cell_lines,18cancers,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,tcga-cancer	0	128	2	38	BOWTIE+BLAT	6:117324378:-	5:150406932:-	ENSG00000047936	ENSG00000019582			TTATATTATTAGATGATTTTTGGATACCAGAAACAAGTTTCATACTTACT*GGCCACCCCGCTGCTGATGCAGGCGCTGCCCATGGGAGCCCTGCCCCAGG	in-frame
WASH3P	WASH5P	pseudogene,m19	1342	127	4	38	BOWTIE+STAR	15:101967910:+	19:64660:-	ENSG00000185596	ENSG00000282458			CCCGTACACTGCCTTTGGTTGCCATTCATGAACCTGCCACCAATAGTAAC*ACAAAGTGCTGGATGCACCTTTTGTGCTTATCTTTGTGCTAAATGTGCCC	intronic/exonic(no-known-CDS)
WASH3P	WASH5P	pseudogene,m19	1342	127	4	29	BOWTIE+STAR	15:101967252:+	19:65317:-	ENSG00000185596	ENSG00000282458			GACTTCACTCAGTGTTTATCTAACATGAGTGAGTGAATGGTGTTTGCTGT*TTTTTTTGGTAAAGGTCCCAGGGGTTGTCGGGTACACAGGTCCTGTCTTT	intronic/exonic(no-known-CDS)
WASH3P	WASH5P	pseudogene,m19,exon-exon	1342	127	3	26	BOWTIE	15:101961641:+	19:66499:-	ENSG00000185596	ENSG00000282458	ENSE00002566302	ENSE00003783427	GAAGCGGCGGCGGGAGCTTCCGGGAGGGCGGCTCGCAG*GCACCATGACTCCTGTGAGGATGCAGCACTCCCTGGCAGGTCA	exonic(no-known-CDS)/exonic(no-known-CDS)
WASH3P	WASH5P	pseudogene,m19	1342	127	2	37	BOWTIE+STAR	15:101966992:+	19:65574:-	ENSG00000185596	ENSG00000282458			CGTCATGGGAAGCCTGGCTTGGTCTCAGGTCAGGGAAGGCAGATGTGAGG*ATGACATTTATGGTAAAGTCTGAGGGTTGAGTGGGTAGGTTGGGAAGAAC	intronic/exonic(no-known-CDS)
WASH3P	WASH5P	pseudogene,m19	1342	127	2	37	BOWTIE+STAR	15:101966414:+	19:66151:-	ENSG00000185596	ENSG00000282458			GAAGTGAGAGCCCAACTTGGAAGCTTTTACTCCTGGGAGTCCGAGAGCTC*CCCTTCCACCCCACTTAGCCTCCTGGTTTCCTGTGGTGGCTCTGCTCTCA	intronic/exonic(no-known-CDS)
WASH5P	WASH3P	pseudogene,m19,exon-exon	1342	127	9	29	BOWTIE	19:66346:-	15:101972901:+	ENSG00000282458	ENSG00000185596	ENSE00003783498	ENSE00003637821	CCCTGCAGTACCTGCAGAAGGTCTCTGGAGACATCTTCAGCAG*GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCGCCTGCAGG	exonic(no-known-CDS)/exonic(no-known-CDS)
WASH5P	WASH3P	pseudogene,m19	1342	127	3	33	BOWTIE+STAR	19:65317:-	15:101967252:+	ENSG00000282458	ENSG00000185596			GACTTCACTCAGTGTTTATCTAACATGAGTGAGTGAATGGTGTTTGCTCT*TTTTTTTGGTAAAGGTCCCAGGGGTTGTCGGGTACACAGGTCCTGTCTTT	exonic(no-known-CDS)/intronic
WASH5P	WASH3P	pseudogene,m19,exon-exon	1342	127	3	26	BOWTIE	19:70928:-	15:101966070:+	ENSG00000282458	ENSG00000185596	ENSE00003775509	ENSE00003488566	AGCGGCGGCGGGAGCTTCCGGGAGGGCGGCTCGCAG*GCACCATGACTCCTGTGAGGATGCAGCACTCCCTGGCAGGTCA	exonic(no-known-CDS)/exonic(no-known-CDS)
WASH5P	WASH3P	pseudogene,m19	1342	127	2	41	BOWTIE+STAR	19:62635:-	15:101969934:+	ENSG00000282458	ENSG00000185596			CCTCCTGCACGGAAGAGACAGGGGCAGGGGAGAGACTCTCTCCCCACCAC*CCCAGCTCAGGCCCCAGCACAGCCCGGCCTCTGGCCTCACTGGCGTCTGT	exonic(no-known-CDS)/intronic
WASH5P	WASH3P	pseudogene,m19	1342	127	2	40	BOWTIE+STAR	19:62163:-	15:101970410:+	ENSG00000282458	ENSG00000185596			TTCTGTATTTATACGCTTGATTTTTAAAACCTAAATGTTGGGCTTCACAT*TTCCTTGTAAATTTCATCTTGGTGATTGCAGTCTACCCTCTGGCCTTTAA	exonic(no-known-CDS)/intronic
WASH5P	WASH3P	pseudogene,m19	1342	127	2	36	BOWTIE+STAR	19:62597:-	15:101969974:+	ENSG00000282458	ENSG00000185596			TCTCCCCACCACCCGGCTCAGGCCCCAGCACAGCCCGGCCTCTGGCCTCA*TGGCGTCTGTGCCCAGTGACGCAGGCAGGTGAGCTCCTGGCAAATTAGCA	exonic(no-known-CDS)/intronic
WASH5P	WASH3P	pseudogene,m19,exon-exon	1342	127	2	22	BOWTIE	19:70928:-	15:101972901:+	ENSG00000282458	ENSG00000185596	ENSE00003775509	ENSE00003637821	AGCGGCGGCGGGAGCTTCCGGGAGGGCGGCTCGCAG*GTGTTCTCCAGTGCCAAGTACCCTGCTCCAGAGCGCCTGCAGG	exonic(no-known-CDS)/exonic(no-known-CDS)
ADGRE2	ADGRE5	banned,known,paralogs,healthy,duplicates,bodymap2,ambiguous,hpa,gtex,cancer,m31,tcga-normal,exon-exon	1977	93	2	30	BOWTIE	19:14774256:-	19:14388702:+	ENSG00000127507	ENSG00000123146	ENSE00003682970	ENSE00003504172	GTCTGGCTGACTCTGCCGGGAGCTGAAACCCAGGACTCCAGGG*GCTGTGCCCGGTGGTGCCCTCAGAACTCCTCGTGTGTCAATGC	in-frame
ADGRE5	ADGRE2	banned,known,paralogs,healthy,duplicates,bodymap2,ambiguous,hpa,gtex,cancer,m31,tcga-normal	1977	93	8	38	BOWTIE+STAR	19:14381261:+	19:14777023:-	ENSG00000123146	ENSG00000127507			ACTCTAGCAGAGGGTTTTTGAAAGCAGGTTGCACTTCATTCTTACTGAGT*GAGTACACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAG	UTR/intronic
ADGRE5	ADGRE2	banned,known,paralogs,healthy,duplicates,bodymap2,ambiguous,hpa,gtex,cancer,m31,tcga-normal,exon-exon	1977	93	3	26	BOWTIE	19:14381545:+	19:14774306:-	ENSG00000123146	ENSG00000127507	ENSE00002770497	ENSE00003682970	CTCCTGCCGGCAGCTCCAACCATGGGAGGCCGCGTCTTTCTCG*CATTCTGTGTCTGGCTGACTCTGCCGGGAGCTGAAACCCAGGA	in-frame
ADGRE5	ADGRE2	banned,known,paralogs,healthy,duplicates,bodymap2,ambiguous,hpa,gtex,cancer,m31,tcga-normal,exon-exon	1977	93	2	30	BOWTIE	19:14388500:+	19:14774054:-	ENSG00000123146	ENSG00000127507	ENSE00003576276	ENSE00003634486	GTCTGGCTGACTCTGCCGGGAGCTGAAACCCAGGACTCCAGGG*GCTGTGCCCGGTGGTGCCCTCAGGACTCCTCGTGTGTCAATGC	in-frame
ADGRE5	ADGRE2	banned,known,paralogs,healthy,duplicates,bodymap2,ambiguous,hpa,gtex,cancer,m31,tcga-normal,exon-exon	1977	93	2	28	BOWTIE	19:14388818:+	19:14772497:-	ENSG00000123146	ENSG00000127507	ENSE00003504172	ENSE00003574549	TCTTTTTCTGAGATCATCACCACCCCGACGGAGACTTGTGACG*ACATCAACGAGTGTGCAACACTGTCGAAAGTGTCATGCGGAAA	in-frame
AC007228.2	TOB2	lincrna,cancer,m3	1043	91	2	33	BOWTIE+STAR	19:56672874:-	22:41433788:-	ENSG00000268568	ENSG00000183864			AAGGTGGATTATCTTCTGAAGAATGGAAACTGTTAGTCCAGAATGATGTC*TTTTCTCAATGCAGTGAGTTATAGATTCTCTAGTTTTCTCCCTAGGGATG	exonic(no-known-CDS)/UTR
TOB2	AC007228.2	lincrna,cancer,m3	1043	91	4	26	BOWTIE+STAR	22:41434099:-	19:56673182:-	ENSG00000183864	ENSG00000268568			AATACAAAAACAGAAATCTGCACTAATTTACCTGGTTTCGTAGGAAAACT*TTTTTTTTATTTTTTACATTTTTTGGTGTCCGTTTGTATTGAATAATTTG	UTR/exonic(no-known-CDS)
TOB2	AC007228.2	lincrna,cancer,m3	1043	91	2	40	BOWTIE+STAR	22:41433799:-	19:56672881:-	ENSG00000183864	ENSG00000268568			ACAAATCAAAAGGTGGATTATCTTCTGAAGAATGGAAACTGTTAGTCCAG*ATGATGTCTTTTTCTCAATGCAGTGAGTTATAGATTCTCTAGTTTTCTCC	UTR/exonic(no-known-CDS)
DTX2P1-UPK3BP1-PMS2P11	AC004951.1	lincrna,m29	1246	70	3	35	BOWTIE+STAR	7:77024867:+	7:44007586:-	ENSG00000265479	ENSG00000228434			AGCCCACCCGATTCCTCCCCACATCCTCCACGTCCCCAGGCCCCACCCAC*CTCCTCCAACTCCTCTGGGGAAACCCAAGCCCTGCAGCTCATGGAACAGA	exonic(no-known-CDS)/exonic(no-known-CDS)
DTX2P1-UPK3BP1-PMS2P11	AC004951.1	lincrna,m29	1246	70	2	35	BOWTIE+STAR	7:77025475:+	7:44006903:-	ENSG00000265479	ENSG00000228434			CATAGCAAGACCCTCGTCTCTATTAAAAATATAAAAAATACGCCAGACGT*GGTGGCTCATGCCTGTAATCCCAGCACTTTAGAAGGCTGAAGCAGGTGGA	exonic(no-known-CDS)/intronic
AC093890.1	GYPE	adjacent,pseudogene,m13,1K<gap<10K,readthrough	0	63	13	38	BOWTIE+BLAT;BOWTIE+STAR	4:143911516:-	4:143880509:-	ENSG00000249741	ENSG00000197465			CCATGATCTCTTCCAAAGAATGCCACAGAATCAGGGGAGGCATGCTTCAG*GAATTGTGAGCATATCAGCATCAAGTACCACTGGTGTGGCAATGCACACT	exonic(no-known-CDS)/CDS(truncated)
NAIP	OCLN	banned,known,bodymap2,hpa,1000genomes,m0,multi	0	62	9	38	BOWTIE+STAR	5:70986290:-	5:69524854:+	ENSG00000249437	ENSG00000197822			GCCTCCCCAGTAGCTGGGACCACAAGCATGTGCCACCACACCTGGCTAAT*TTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCATGTTGGCCAGGCTGGT	UTR/intronic
NAIP	OCLN	banned,known,bodymap2,hpa,1000genomes,m0,multi,exon-exon	0	62	8	27	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	5:70979869:-	5:69534694:+	ENSG00000249437	ENSG00000197822	ENSE00003590701	ENSE00003560198	TTATTGATCCAAATTTCAGCTGAGTATGATCCTTCCAAACTAG*GTTAAAAATGTGTCTGCAGGCACACAGGACGTGCCTTCACCCC	out-of-frame
NAIP	OCLN	banned,known,bodymap2,hpa,1000genomes,m0,multi,exon-exon	0	62	7	30	BOWTIE	5:70983775:-	5:69534694:+	ENSG00000249437	ENSG00000197822	ENSE00002214653	ENSE00003560198	TCCCTGGAATCTCTTGAAGTCTCAGGGACAATCCAGTCACAAG*GTTAAAAATGTGTCTGCAGGCACACAGGACGTGCCTTCACCCC	out-of-frame
NAIP	OCLN	banned,known,bodymap2,hpa,1000genomes,m0,multi	0	62	2	21	BOWTIE+STAR	5:70986290:-	5:69543683:+	ENSG00000249437	ENSG00000197822			GCCTCCCCAGTAGCTGGGACCACAAGCATGTGCCACCACACCTGGCTAAT*TTTTTGTATTTTTTGTAGAGATGGGGTTTCACCATGTTGGCCAGGCCGAT	UTR/intronic
PRIM1	NACA	banned,known,adjacent,conjoing,healthy,bodymap2,hpa,1000genomes,cancer,m60,gap<1K,readthrough	0	61	16	36	BOWTIE+BLAT;BOWTIE+STAR	12:56731608:-	12:56731607:-	ENSG00000198056	ENSG00000196531			CTTCAAGAGCCATTTAATAAATATGGCAGAACTATATATGTGTCTTAAAC*CTCAAAGTAAATTTTCCTTGAGAAATAATTTATGTTGAAAAGATTTCCTG	UTR/UTR
PRIM1	NACA	banned,known,adjacent,conjoing,healthy,bodymap2,hpa,1000genomes,cancer,m60,gap<1K,readthrough,exon-exon	0	61	7	30	BOWTIE	12:56734147:-	12:56714687:-	ENSG00000198056	ENSG00000196531	ENSE00003575614	ENSE00003607207	AATCTGGATAAATCCCGAAAAGGAGAACTTCTTAAGAAGAGTG*GGTCTGGAACAGAATCTGACAGTGATGAATCAGTACCAGAGCT	in-frame
RMND5A	ANAPC1	banned,known,bodymap2,hpa,m0,multi,exon-exon	0	55	21	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	2:86741069:+	2:111822600:-	ENSG00000153561	ENSG00000153107	ENSE00002531730	ENSE00002441208	CATCCACAGCAGTGTTTCTCGGGTTGGAAAAGCCATTGATAAG*GATTCACTTTAAGAGATTTGGAAACTCTTCCCTTTGGAATTGC	out-of-frame
TTTY15	USP9Y	banned,known,adjacent,lincrna,healthy,cacg,bodymap2,hpa,chimerdb3pub,1K<gap<10K,readthrough	0	54	17	40	BOWTIE+BLAT;BOWTIE+STAR	Y:12686606:+	Y:12702010:+	ENSG00000233864	ENSG00000114374			TGGCCTCATATTTTGTGTACACAGTCCCTGTACAGGGTTTCTGACCTGTG*AGAGCTTGGAGATAATTCTGGTGGCTGTGTGGAGTATGTGTTGGAGGTGA	exonic(no-known-CDS)/UTR
TTTY15	USP9Y	banned,known,adjacent,lincrna,healthy,cacg,bodymap2,hpa,chimerdb3pub,1K<gap<10K,readthrough	0	54	10	40	BOWTIE+BLAT;BOWTIE+STAR	Y:12690441:+	Y:12702010:+	ENSG00000233864	ENSG00000114374			CACTTCAGTTTTGAGATCTCTGCTGTATTTGTATACAAGTATTTTGGAAG*AGAGCTTGGAGATAATTCTGGTGGCTGTGTGGAGTATGTGTTGGAGGTGA	exonic(no-known-CDS)/UTR
AC009086.3	SMG1	m42	375	49	8	37	BOWTIE+STAR	16:29595389:-	16:18926454:-	ENSG00000279583	ENSG00000157106			CTCTCCCCAGGCCCGGCGGGGCCGACCCCGCCTCTCGCTCCCAGCATGCC*GTGCGACAGCGGCGGCGCGGCGGGCGGAGCCGGGAGGCGGGGAAGCAGTG	exonic(no-known-CDS)/UTR
AC009086.3	SMG1	m42	375	49	3	30	BOWTIE+STAR	16:29595244:-	16:18926309:-	ENSG00000279583	ENSG00000157106			TCCTCGTCCTCCGGGGCCCCGGCGTCGTGGGCCGCGCATGGCCCTGGAAG*AGACGTCGCCTCCCCTTCATCCGCCTCTCTCTCACCGCGCCGCTCCCGCC	exonic(no-known-CDS)/UTR
AL132656.3	NUTM2A-AS1	antisense,m4	350	49	2	33	BOWTIE+BLAT;BOWTIE+STAR	10:79663926:+	10:87331096:-	ENSG00000272489	ENSG00000223482			AACTTGGCAAACATAATTAATAATCATGGGTTATTAATTACTTCTGCAAG*AAACTTAAATCCTCAGTGTGACACAACTCAGTCCTTCTACTGCAGCAGCT	exonic(no-known-CDS)/exonic(no-known-CDS)
SMG1	AC009086.3	m42	375	49	2	28	BOWTIE+STAR	16:18926284:-	16:29595219:-	ENSG00000157106	ENSG00000279583			GTGGGCCGCGCACGGCCCTGGAAAAGACGTCGCCTCCCCTTCATCCGCCT*CTCTCTCTCACCGCGCCGCTCCCGCCTCCTCATTCTGCGTTGCGGGCTCA	UTR/exonic(no-known-CDS)
NPEPPS	TBC1D3	banned,known,oncogene,bodymap2,hpa,gtex,18cancers,tumor,m0,multi,exon-exon	0	47	15	30	BOWTIE;BOWTIE+STAR	17:47592545:+	17:38191030:-	ENSG00000141279	ENSG00000274611	ENSE00003785912	ENSE00003731868	AACATGTATTTAACCAAGTTCCAACAAAAGAATGCTGCCACAG*GATGGACGTGGTAGAGGTCGCGGGCAGTTGGTGGGCACAAGAG	CDS(complete)/UTR
BANK1	IGH@	banned,known,hpa,m3	0	31	3	41	BOWTIE+BLAT	4:101841881:+	14:106819539:-	ENSG00000153064	ENSG09000001018			GTTCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGT*TTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGATTTCCAGTTTCATC	intronic/---
TNFRSF17	SNX29	adjacent,tcga,cell_lines,non_tumor_cells,chimerdb3seq,cancer,tumor,tcga-cancer,1K<gap<10K,readthrough	0	30	14	41	BOWTIE+BLAT;BOWTIE+STAR	16:11967843:+	16:11999297:+	ENSG00000048462	ENSG00000048471			CTGCCAGCTGCTTTGAGTGCTACGGAGATAGAGAAATCAATTTCTGCTAG*GATCACAGAACAATGACAAAAGACAATTTCTGCTGGAGCGACTGCTGGAT	out-of-frame
TNFRSF17	SNX29	adjacent,tcga,cell_lines,non_tumor_cells,chimerdb3seq,cancer,tumor,tcga-cancer,1K<gap<10K,readthrough	0	30	3	28	BOWTIE+BLAT;BOWTIE+STAR	16:11967843:+	16:11983566:+	ENSG00000048462	ENSG00000048471			CTGCCAGCTGCTTTGAGTGCTACGGAGATAGAGAAATCAATTTCTGCTAG*GCACTGGATTGATCTATGATGGTGGAATGCAAGAAGTACATGTTCTACCA	CDS(truncated)/intronic
MIR100HG	SPN	oncogene,m6	457	29	20	39	BOWTIE+STAR	11:122506443:-	16:29666553:+	ENSG00000255248	ENSG00000197471			AACACACACAGACACACACACACACACACACACACACACACACACACACG*CGCGCGCGCGCGCGCGCTCTCCTGCGAACAGAGGCAGGGGGAGAGGGGTT	intronic/UTR
MIR100HG	SPN	oncogene,m6	457	29	3	36	BOWTIE+STAR	11:122363024:-	16:29665301:+	ENSG00000255248	ENSG00000197471			TCGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGC*CTGCCTCAGCCTCCCAAAGTGCTGAGATTACAGACATGAGCCTCCGCGCC	intronic/UTR
MIR100HG	SPN	oncogene,m6	457	29	2	40	BOWTIE+STAR	11:122398748:-	16:29665326:+	ENSG00000255248	ENSG00000197471			TAACTCCTGACCTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGG*GATTACAGACATGAGCCTCCGCGCCTTGCCTCCTCACCCACCTCTTCACT	intronic/UTR
SPN	MIR100HG	oncogene,m6	457	29	7	37	BOWTIE+STAR	16:29665227:+	11:122568387:-	ENSG00000197471	ENSG00000255248			CCGAGTAACTGAGATTACAGGCACCCACCACCATGCCCAGCTGCTTTTTT*TGTATTTTTGGTAGAGATGGGGTTTCACCATATTGGCCAGGTTGGTCTTG	UTR/intergenic
SPN	MIR100HG	oncogene,m6	457	29	3	34	BOWTIE+STAR	16:29666518:+	11:122506476:-	ENSG00000197471	ENSG00000255248			AAGTCTCCATTTCTGCAGTACACATGCATGTGCGCTCTCTCTCTCTCTCT*CACACACACACACACACACACACACACACACACGAAAGAAAAGAAAAGAA	UTR/intronic
SPN	MIR100HG	oncogene,m6	457	29	2	26	BOWTIE+STAR	16:29666361:+	11:122587592:-	ENSG00000197471	ENSG00000255248			AAGTGAGCTGTGATTGCACCACTGCACTTCAGCCTGGGCAACAGAGTGAG*AAAAAAAAAAAAAAAAGAAAAGAAAAGAAAAAAATAATCTTTGAAAGCGG	UTR/intergenic
SPN	MIR100HG	oncogene,m6	457	29	2	25	BOWTIE+STAR	16:29665223:+	11:122576939:-	ENSG00000197471	ENSG00000255248			CTTCCCGAGTAACTGAGATTACAGGCACCCACCACCATGCCCAGCTGCTT*TTTTTGTATTTTTGGTAGAGATGGGTTTCACCATGTTGACCAGGCTGGTC	UTR/intergenic
SPN	MIR100HG	oncogene,m6	457	29	2	22	BOWTIE+STAR	16:29667392:+	11:122127457:-	ENSG00000197471	ENSG00000255248			TTGACAGATATGGTTGTTTTCTAAGCCAGGACTGGTTTTAGTCAGGTCCT*AAAAAAAAAAAAAAAAAGAGTTAAACTAACTGGTAGATGAGAGCGGGT	UTR/intronic
SPN	MIR100HG	oncogene,m6	457	29	2	20	BOWTIE+STAR	16:29665286:+	11:122398786:-	ENSG00000197471	ENSG00000255248			GTAGAGATGGGGTTTCACCATGTTGGCTAGGCTGGTCTCAAACTCCTGAC*CTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCA	UTR/intronic
SPN	MIR100HG	oncogene,m6	457	29	2	20	BOWTIE+STAR	16:29667392:+	11:121947699:-	ENSG00000197471	ENSG00000255248			GACAGATATGGTTGTTTTCTAAGCCAGGACTGGTTTTAGTCAGGTCCT*AAAAAAAAAAAAAAAAAGAGAGAAAAGAAAGAGTGCACCCAACACAGAAT	UTR/intergenic
AC092718.8	AC016769.2	pseudogene,m14	390	28	3	21	BOWTIE+STAR	16:81090618:-	7:64582903:+	ENSG00000284512	ENSG00000224669			AGAGAAACACGAATGGGTAACAACAGAAAATGGCATTGGAACAGTGGGAA*TCAGCAGTTTTGCACAGGAAACGTTGGGAGATATTGTTTACTGTAGTCTG	CDS(truncated)/exonic(no-known-CDS)
AL021368.4	WDR70	m7,exon-exon	230	28	6	30	BOWTIE	6:57961321:-	5:37379489:+	ENSG00000283352	ENSG00000082068	ENSE00003792457	ENSE00003478369	TGCGGTGTGCGGCCAGCCATGGAGCGCTCTGGGCCCAGCGAAG*TGACAGGCTCAGACGCGTCGGGACCGGACCCGCAGCTTGCGGT	exonic(no-known-CDS)/CDS(truncated)
WDR70	AL021368.4	m7,exon-exon	230	28	10	29	BOWTIE	5:37379554:+	6:57959111:-	ENSG00000082068	ENSG00000283352	ENSE00003478369	ENSE00003801048	CCGGACCCGCAGCTTGCGGTCACCATGGGCTTCACGGGGTTCG*GTAAAAAAGCTCACACATTTGACTTGGAAGCAATGTTTGAACA	CDS(truncated)/exonic(no-known-CDS)
WDR70	AL021368.4	m7,exon-exon	230	28	6	30	BOWTIE	5:37379392:+	6:57961224:-	ENSG00000082068	ENSG00000283352	ENSE00002056284	ENSE00003800756	TGGGGTGTGCGGCCAGCCATGGAGCGCTCTGGGCCCAGCGAAG*TGACAGGCTCAGACGCATCGGGACCGGACCCGCAGCTTGTGGT	CDS(truncated)/exonic(no-known-CDS)
WDR70	AL021368.4	m7	230	28	3	39	BOWTIE+BLAT;BOWTIE+STAR	5:37381685:+	6:57947177:-	ENSG00000082068	ENSG00000283352			GTTTGAACAAACTCGAAGGACAGCTGTGGAAAGAAGTCGCAAAACACTGG*TTCAACCCAATGGAAATGGATTGAAAGAGTGAAAGTCACTGGTCTCAAAG	CDS(truncated)/intronic
WDR70	AL021368.4	m7	230	28	3	31	BOWTIE+STAR	5:37381685:+	6:57953043:-	ENSG00000082068	ENSG00000283352			GTTTGAACAAACTCGAAGGACAGCTGTGGAAAGAAGTCGCAAAACACTGG*TGTTCTTCCAGACTTGGCAATTAGATTACATTTAGACCGTCGAATTAAAA	CDS(truncated)/intronic
WDR70	AL021368.4	m7	230	28	2	41	BOWTIE+STAR	5:37379474:+	6:57961235:-	ENSG00000082068	ENSG00000283352			GGCCGTGTCGGGGGAGCTGGGGCGCCGCACTAACTAGGCCGCCTCTCTTT*TCTTGCTCCAGTGACAGGCTCAGACGCATCGGGACCGGACCCGCAGCTTG	intronic/intronic
ABBA01031661.1	ABBA01031663.1	pseudogene,m6,10K<gap<100K	54	26	12	41	BOWTIE+STAR	20:29410456:-	20:29448626:-	ENSG00000282935	ENSG00000282911			CCTGTTAGATGAGCTCCTGTCAACCCCAGAGTTTCAGCAAAAGGCACAAA*CTTTCCTAGATCCGGCGCCACTGGGGGAGCTGAAGGACGTGGAAGAGCCC	exonic(no-known-CDS)/exonic(no-known-CDS)
CCDC88C	NAP1L1	known,ambiguous,non_cancer_tissues,m2,multi	918	26	2	39	BOWTIE+STAR	14:91384500:-	12:76053301:-	ENSG00000015133	ENSG00000187109			ATGGGGTGATGATTATGATGAAGAAGGTGAAGAAGCAGATGAGGAAGGGG*AAGAAGAAGCAGAAACACAAGGGACGTGGGACAGTTCGTACTGTGACTAA	UTR/CDS(truncated)
LSP1	IGK@	m14	0	26	2	34	BOWTIE+STAR	11:1886928:+	2:89581054:-	ENSG00000130592	ENSG09000000011			CCAGGGGCAAGGCTGGGCTGCAGAGCCAGCGCCTGGGAGTTTAGTAGCAG*GACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAGACTCCGTCCTGCAAGG	intronic/---
NAP1L1	CCDC88C	known,ambiguous,non_cancer_tissues,m2,multi	918	26	3	19	BOWTIE+STAR	12:76053767:-	14:91278920:-	ENSG00000187109	ENSG00000015133			TCTGATCCCTTTTCTTTTGATGGACCAGAAATTATGGGTTGTACAGGGTG*TCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGTATTTGGTGGTTTGGC	intronic/intronic
PPIP5K1	CATSPER2	banned,known,bodymap2,hpa,1000genomes,m1,multi,10K<gap<100K,exon-exon	126	22	6	29	BOWTIE	15:43564867:-	15:43640496:-	ENSG00000168781	ENSG00000166762	ENSE00003788646	ENSE00003500886	CATGGCAAAAAGCTACCACCTGCCAGTCTGAAGCACCGAGATG*AATTGCTGGAATCCACAAATACCAAACTATGGCCATTGAAGCT	in-frame
PPIP5K1	CATSPER2	banned,known,bodymap2,hpa,1000genomes,m1,multi,10K<gap<100K,exon-exon	126	22	4	28	BOWTIE	15:43571412:-	15:43668118:-	ENSG00000168781	ENSG00000166762	ENSE00003586891	ENSE00003522972	GAGATCACCCCTCATTCGTAACCGAAAAGCTGGTTCCATGGAG*GTACTTTCTGAGACTTCATCCTCGAGGCCTGGTGGCTACCGGC	CDS(truncated)/UTR
PPIP5K1	CATSPER2	banned,known,bodymap2,hpa,1000genomes,m1,multi,10K<gap<100K,exon-exon	126	22	2	23	BOWTIE	15:43564867:-	15:43649879:-	ENSG00000168781	ENSG00000166762	ENSE00003788646	ENSE00001581568	CATGGCAAAAAGCTACCACCTGCCAGTCTGAAGCACCGAGATG*AGGTATCTGCCGGTACTGAGATGTAAGTGATCAGCTGAAGGGA	CDS(complete)/UTR
TRB@	SYNE3	cancer,m19	0	22	2	29	BOWTIE+STAR	7:142662667:-	14:95427145:-	ENSG09000001076	ENSG00000176438			ACCAAGGAGCCCTCTGATGGACCTGTCCGGGCATAACAGAAGGCTCGCAC*TCTTCTGGTCACTTCTCACTATGTCCCCTCAGCTCCTATCTCTGTATGGC	---/intronic
AC092821.3	AC141557.1	pseudogene,m3,exon-exon	113	21	3	29	BOWTIE	12:9569202:+	12:9402556:-	ENSG00000284634	ENSG00000256673	ENSE00003813482	ENSE00002277932	TCTGAGCTTTCTTCTTGGACACCTAATACCCACAGTCCTCCAG*CAGTGAAGGATCCAGTGAGATTTTCCAGGTTAACGGTCATAAT	exonic(no-known-CDS)/exonic(no-known-CDS)
AC141557.1	AC092821.3	pseudogene,m3	113	21	6	34	BOWTIE+BLAT;BOWTIE+STAR	12:9398382:-	12:9575643:+	ENSG00000256673	ENSG00000284634			GTTCAACATTCAGCCAGCCCCAGCCATGGTCTACGATTACTATGAAAAAG*AAGAATATGCCCTAGCTTTTTACAACATCGACAGTAGTTCAGTTTCCCAG	exonic(no-known-CDS)/intronic
AC141557.1	AC092821.3	pseudogene,m3,exon-exon	113	21	2	22	BOWTIE	12:9402427:-	12:9571461:+	ENSG00000256673	ENSG00000284634	ENSE00002277932	ENSE00003812092	ATACACAGTAGATGTGGAAGGACACGGTTGTACATTTATCCAG*GCCACCCTTAAGTACAATGTTCTCCTACCTAAGAAGGCATCTG	exonic(no-known-CDS)/exonic(no-known-CDS)
SLC45A3	BRAF	known,oncogene,cosmic,ticdb,chimerdb3kb,chimerdb3pub,chimerdb3seq,cancer,tumor,exon-exon	0	20	25	30	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	1:205680394:-	7:140794467:-	ENSG00000158715	ENSG00000157764	ENSE00001443628	ENSE00003569635	CTGCACGCGCTGGCTCCGGGTGACAGCCGCGCGCCTCGGCCAG*GCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCA	UTR/CDS(truncated)
AC009093.10	BANP	oncogene,tumor,m7,exon-exon	309	19	6	30	BOWTIE	16:29328624:+	16:88037973:+	ENSG00000284685	ENSG00000172530	ENSE00003811530	ENSE00003683876	GGTGCCACAGGGGGAGCAAGTCCAGATCACGCAGGACAGCGAG*GGCAACCTCCAGATCCATCACGTGGGGCAGGACGGTCAGCTTC	exonic(no-known-CDS)/CDS(truncated)
AC009093.10	BANP	oncogene,tumor,m7,exon-exon	309	19	3	29	BOWTIE	16:29312589:+	16:88033109:+	ENSG00000284685	ENSG00000172530	ENSE00003813161	ENSE00002215853	GGGAAGAAGCAGCTGGACCCGCTCACCATCTATGGCATCCGGT*AGCCGATGATGAGCACCCCACCTCCTGCCAGCGAGCTCCCGCA	exonic(no-known-CDS)/CDS(truncated)
BANP	AC009093.10	oncogene,tumor,m7,exon-exon	309	19	7	30	BOWTIE	16:88038011:+	16:29320928:+	ENSG00000172530	ENSG00000284685	ENSE00003683876	ENSE00003811895	CGAGGGCAACCTCCAGATCCATCACGTGGGGCAGGACGGTCAG*GTCACCTTTTCTATAAATTTGGCATCACAGAATCTGACTGGTA	CDS(truncated)/exonic(no-known-CDS)
BANP	AC009093.10	oncogene,tumor,m7,exon-exon	309	19	6	30	BOWTIE	16:88035394:+	16:29331237:+	ENSG00000172530	ENSG00000284685	ENSE00001659025	ENSE00003812137	GGTGCCGCAGGGGGAGCAAGTCCAGATCACGCAGGACAGCGAG*GGCAACCTCCAGATCCATCACGTGGGGCAGGATGGTCAGCTGA	CDS(truncated)/exonic(no-known-CDS)
BANP	AC009093.10	oncogene,tumor,m7,exon-exon	309	19	6	30	BOWTIE	16:88038011:+	16:29312350:+	ENSG00000172530	ENSG00000284685	ENSE00003683876	ENSE00003813161	CGAGGGCAACCTCCAGATCCATCACGTGGGGCAGGACGGTCAG*AGGATTACCCCAATGGCACCTGGCTGGGCGACGAGAACAACCC	CDS(truncated)/exonic(no-known-CDS)
BANP	AC009093.10	oncogene,tumor,m7,exon-exon	309	19	4	29	BOWTIE	16:87984259:+	16:29251479:+	ENSG00000172530	ENSG00000284685	ENSE00001188809	ENSE00003812336	GCTCCCCTCTCGGGGCAACCCAGACGTGCAACAAAGTGCGATG*GGATCTGAAGGGAGCCGAGCTCCTTCTGCAGAAGGGCGCTGAG	CDS(truncated)/exonic(no-known-CDS)
BANP	AC009093.10	oncogene,tumor,m7,exon-exon	309	19	3	29	BOWTIE	16:88018667:+	16:29326347:+	ENSG00000172530	ENSG00000284685	ENSE00003510744	ENSE00003812990	GGGAAGAAGCAGCTGGACCCGCTCACCATCTACGGCATCCGGT*AGCCGATGATGAGCACCCCACCTCCTGCCAGAGAGCTCCTGCA	CDS(truncated)/exonic(no-known-CDS)
BANP	AC009093.10	oncogene,tumor,m7,exon-exon	309	19	2	30	BOWTIE	16:88038011:+	16:29326347:+	ENSG00000172530	ENSG00000284685	ENSE00003683876	ENSE00003812990	CGAGGGCAACCTCCAGATCCATCACGTGGGGCAGGACGGTCAG*AGCCGATGATGAGCACCCCACCTCCTGCCAGAGAGCTCCTGCA	CDS(truncated)/exonic(no-known-CDS)
IGH@	SYNE3	known,cancer,m3	0	19	2	22	BOWTIE+STAR	14:106495084:+	14:95475836:-	ENSG09000000017	ENSG00000176438			GCTGGGCATAGTGGCACATGCCTGTAATCCCAGCTACCCGGGAGGCTGAG*NNNNNNNNNNNNNNNNNNNNNGCCCCTGCAGGTGCCATGACTCAGCAGCCCCAGGACGACTTTGACAGGAG	---/UTR
TOR1AIP1	EXOSC6	m3	8	18	6	28	BOWTIE+STAR	1:179921000:+	16:70247827:-	ENSG00000143337	ENSG00000223496			TCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCAC*CTGCCTCGTCCTCCCAAAGTGCTGGGGTTACAGGTGTGAGCCACTGCACC	UTR/UTR
TOR1AIP1	EXOSC6	m3	8	18	2	26	BOWTIE+STAR	1:179916828:+	16:70249290:-	ENSG00000143337	ENSG00000223496			CTGCAACCTCCGCCTCCCGTGTTCAAGTGATTCTCCTGCCTCAGCCTCCC*AAGTAGCTGGTATTACAGGAGTGTGCCATTAGCCTGGCTAATTTTTGTAT	intronic/UTR
TRB@	ALK	oncogene,cancer,tumor,m3	0	18	2	40	BOWTIE+BLAT	7:142395093:-	2:29784590:-	ENSG09000001076	ENSG00000171094			CACAGCAACCTCTGCCTCCTGGGTTTAAGCAATTCTCCTGCCTCAGCTTC*CCAAGTAGCTGGGATTACAGGTGCCTGCCACCACACCTGGCTAATTTTTG	---/intronic
ZNF549	KLHL6	m5	335	18	2	27	BOWTIE+STAR	19:57556882:+	3:183521175:-	ENSG00000121406	ENSG00000172578			CCCTAGCCCCAACCCTGTGCTCACAGAAACATGTGCTGTATTGACTCAAG*GTTTAATGGATTTAGGGCTGTGCAGGAGGTGCTTTGTTAAAAATGTGTTT	UTR/UTR
ARPC2	AL022322.2	antisense,m6	74	17	8	31	BOWTIE+STAR	2:218236682:+	22:38132006:+	ENSG00000163466	ENSG00000279080			AAGTACAAAATTAGCCAGGCCTGGTGGCGCATGCCTGTAATCCCAGCTGC*TTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGT	UTR/exonic(no-known-CDS)
NSF	LRRC37A3	banned,known,hpa,m0,multi,exon-exon	0	17	4	23	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	17:46704854:+	17:64898459:-	ENSG00000073969	ENSG00000176809	ENSE00003258850	ENSE00001540364	GAGAGGAGACTTCCTTGCTTCTTTGGAGAATGATATCAAACCA*GCTGAAGTGCAATGTTGTGATCTCGGCTCACTGCAACCTCTGC	CDS(truncated)/UTR
NSF	LRRC37A3	banned,known,hpa,m0,multi,exon-exon	0	17	3	21	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	17:46704854:+	17:64892600:-	ENSG00000073969	ENSG00000176809	ENSE00003258850	ENSE00003547821	GAGAGGAGACTTCCTTGCTTCTTTGGAGAATGATATCAAACCA*AAATTTCCAAGGAAACTATATTTCTTACATTGATGGAAATGTA	in-frame
AC009299.2	MXRA7	pseudogene,m3	128	16	5	29	BOWTIE+STAR	2:161340829:-	17:76680881:-	ENSG00000232320	ENSG00000182534			GAAACCAGTACGAGAAGATGATGACCAAAGAGGAGCTGGAGGAGGAGCAG*AGAACTGAAGAATAACGAAGTTATCCTTAGCGTCCTCCTAAAGGCTTTTC	exonic(no-known-CDS)/intronic
AL592310.1	FAM133B	pseudogene,m10	104	16	3	34	BOWTIE+STAR	1:227598469:-	7:92562326:-	ENSG00000225934	ENSG00000234545			AAGCAACAGAAAAAAAACAAAAAAAGAAAAAGAAGCATAAGAAACATAGT*AAGAAGAAAAAGAAGGCTGCTAGTTCAAGTCCTGACTCACCATAACATTA	exonic(no-known-CDS)/CDS(truncated)
AL592310.1	FAM133B	pseudogene,m10	104	16	2	40	BOWTIE+BLAT;BOWTIE+STAR	1:227598694:-	7:92577174:-	ENSG00000225934	ENSG00000234545			CTTCTGAAAGCTCCATGTCATAATCTGAATCAGACAGTAAGGATAGTTTA*AGAAAGAAAAAGAAGAACCGTTCACATAAATCTTCTGAAAGCTCCATGTC	exonic(no-known-CDS)/CDS(truncated)
AL592310.1	FAM133B	pseudogene,m10	104	16	2	39	BOWTIE+STAR	1:227598953:-	7:92578395:-	ENSG00000225934	ENSG00000234545			GAAAAGAAAGGCTCCAAGGTTTTGGCTGAATTTGAAGAAAAAAATGAATG*AGAACTGGAAGAAAGAACTGGAAAAACACAGGGAGAAATTGTTAAGTGGA	exonic(no-known-CDS)/intronic
CCDC32	CBX3	banned,known,healthy,tcga,hpa,gtex,gliomas,chimerdb3pub,chimerdb3seq,tcga-normal,oesophagus	0	16	6	41	BOWTIE+BLAT;BOWTIE+STAR	15:40561981:-	7:26201745:+	ENSG00000128891	ENSG00000122565			AGATTCATTCTGCCTCTTGTTAGCCATTTTATTTTAAAAATATTTCCTGA*CTTCGGATGTGGCTTGAGCTGTAGGCGCGGAGGGCCGGAGACGCTGCAGA	UTR/UTR
CTSC	RAB38	banned,known,adjacent,healthy,non_tumor_cells,hpa,1000genomes,chimerdb3pub,chimerdb3seq,100K<gap<200K,readthrough,exon-exon	0	14	2	27	BOWTIE	11:88300530:-	11:88149955:-	ENSG00000109861	ENSG00000123892	ENSE00000743350	ENSE00000989348	AATGTTCATGGTATCAATTTTGTCAGTCCTGTTCGAAACCAAG*GTCAAGAAAGATTTGGAAACATGACGAGGGTCTATTACCGAGA	in-frame
CCDC50	MALT1	oncogene,cancer,m3	30	13	2	20	BOWTIE+STAR	3:191392749:+	18:58698080:+	ENSG00000152492	ENSG00000172175			ATGAAGTGGTCATCTATCCAAGTATTTGGTTTTTGTTTTGTTTTGTTTTG*TTTTTTGAGATGGAGTCTCGCTCTGTCGCCAGGCTGGAGTGCAGTGGCGC	UTR/intronic
SERF1A	SMN1	banned,known,adjacent,bodymap2,hpa,m0,multi,1K<gap<10K,readthrough,exon-exon	0	13	5	28	BOWTIE	5:70901933:+	5:70938839:+	ENSG00000172058	ENSG00000172062	ENSE00003460559	ENSE00001688516	AGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAG*AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAG	out-of-frame
SERF1A	SMN1	banned,known,adjacent,bodymap2,hpa,m0,multi,1K<gap<10K,readthrough,exon-exon	0	13	2	28	BOWTIE	5:70917048:+	5:70938839:+	ENSG00000172058	ENSG00000172062	ENSE00002077354	ENSE00001688516	GGGAGAATCCTTGCTTTCCTCTTCCAGCTGCTGGTGGCTCCAG*AGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAG	out-of-frame
SMN1	SERF1A	banned,known,adjacent,bodymap2,hpa,m0,multi,1K<gap<10K	0	13	2	17	BOWTIE+STAR	5:70952640:+	5:70913385:+	ENSG00000172062	ENSG00000172058			TTGATTAAAAGTTATGTAATAACCAAATGCAATGTGAAATATTTTACTGG*AAAAAAAAAAAAAAAACATACAAACCGAATTTCCATTCCACATACTACTC	UTR/intronic
AC004951.1	POLR2J3	lincrna,m3	0	12	3	38	BOWTIE+STAR	7:44004380:-	7:102557705:-	ENSG00000228434	ENSG00000168255			GATCATGCCACTGCACTCCATCCTGGGGAGCAGAGCTAGATTCTGTCTCA*AAAAAAAAAATTTGTGGGTGCCAAGACTCAAGACCATGGGAGCTGGTC	exonic(no-known-CDS)/intronic
IGH@	EBF1	banned,known,cancer,m0,multi	0	12	3	21	BOWTIE+STAR	14:106880684:+	5:158930263:-	ENSG09000000018	ENSG00000164330			TTCTTCTCACCTCCATTGGCAAAAAAAAAAAAAAACAAAAAAAAAAAAAC*AAACAAAAAAACTAGAAAACAGCTCGAGCCTTTTTTGCTCAAGTTTTGTT	---/intronic
MND1	TMEM131L	adjacent,tcga,non_cancer_tissues,chimerdb3seq,tcga-cancer,10K<gap<100K,readthrough,exon-exon	0	12	3	26	BOWTIE	4:153409015:+	4:153467211:+	ENSG00000121211	ENSG00000121210	ENSE00003485440	ENSE00001713308	CAAGCAAATAAAGTAGCCAAAGAAGCTGCTAACAGATGGACTG*CGATTGAGCCGTTGCCGAACGTGGTGGAGCTGTGGCAGGCAGA	in-frame
MRPS33	TMPO	ribosomal,m5	144	12	8	40	BOWTIE+STAR	7:141008967:-	12:98548967:+	ENSG00000090263	ENSG00000120802			CAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATAC*AAAAATTAGCTGGGCGTGATGATGTGCGCCTGTAGTCCTGTCTACTAG	intronic/UTR
MRPS33	TMPO	ribosomal,m5	144	12	8	40	BOWTIE+STAR	7:141009304:-	12:98548967:+	ENSG00000090263	ENSG00000120802			TGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATAC*AAAAATTAGCTGGGCGTGATGATGTGCGCCTGTAGTCCTGTCTACTAG	intronic/UTR
MRPS33	TMPO	ribosomal,m5	144	12	6	29	BOWTIE+STAR	7:141004968:-	12:98548918:+	ENSG00000090263	ENSG00000120802			CCCAGCACTTTGGGAGGTCGAGGCGGGTGGATCACGAGGTCAGGGGATCG*AGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAA	UTR/UTR
POLR2J3	AC004951.1	lincrna,m3	0	12	8	41	BOWTIE+STAR	7:102557707:-	7:44004378:-	ENSG00000168255	ENSG00000228434			TCATGCCACTGCACTCCATCCTGGGGAGCAGAGCTAGACTCTGTCTCA*AAAAAAAAAATTTGTGGGTGCCAAGACTCAAGACCATGGGAGCTGGTCGG	intronic/exonic(no-known-CDS)
POLR2J3	AC004951.1	lincrna,m3,exon-exon	0	12	6	24	BOWTIE	7:102566997:-	7:44005335:-	ENSG00000168255	ENSG00000228434	ENSE00003643284	ENSE00001805426	CTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACT*AGTAAAGAGGACAAATAGGTGAAAGAATAAATGAAAGGCTGGA	CDS(truncated)/exonic(no-known-CDS)
THAP11	ATXN3	m4	0	12	8	41	BOWTIE+BLAT;BOWTIE+STAR	16:67842947:+	14:92071034:-	ENSG00000168286	ENSG00000066427			AGCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAG*CAGCAGCAGCAGCAGCAGCAGCAGGGGGACCTATCAGGACAGAGTTCACA	in-frame
THAP11	ATXN3	m4	0	12	3	40	BOWTIE+STAR	16:67842948:+	14:92071009:-	ENSG00000168286	ENSG00000066427			GCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGC*GGGACCTATCAGGACAGAGTTCACATCCATGTGAAAGGCCAGCCACCAGT	in-frame
TMPO	MRPS33	ribosomal,m5	144	12	6	39	BOWTIE+STAR	12:98548905:+	7:141004979:-	ENSG00000120802	ENSG00000090263			TACGCCTGTAATCCCAGCACTTTGGGAGGCCAGGGCGGGTGGATCACGAG*GTCAGGGGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTAC	UTR/UTR
AL512306.2	ENTPD1-AS1	lincrna,antisense,m6,exon-exon	0	11	2	24	BOWTIE	1:204629712:+	10:95875666:-	ENSG00000240219	ENSG00000226688	ENSE00001628090	ENSE00001648768	CATGTGGAACTATAAGTCCAATTAAACCTCTTTTTCTTCCCGG*TCTCAGGTATGTCTTTATCAGCAGCATGAAAATGGACTAATAG	exonic(no-known-CDS)/exonic(no-known-CDS)
DCAF10	ZNF587B	m10	0	11	5	38	BOWTIE+STAR	9:37863096:+	19:57844270:+	ENSG00000122741	ENSG00000269343			GCCAGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAG*GTGGGTGGATCACAAGGACAGGAAGGAGTTCAAGACCAGCCTGGGCAATA	UTR/CDS(truncated)
FCRL4	ZNF587B	cancer	0	11	6	41	BOWTIE+STAR	1:157570818:-	19:57844270:+	ENSG00000163518	ENSG00000269343			GCCAGGAGCGGTGGCTCATGCCTGTAATCCCAGCGCTTTGGGAGGCCGAG*GTGGGTGGATCACAAGGACAGGAAGGAGTTCAAGACCAGCCTGGGCAATA	intergenic/CDS(truncated)
KANSL1	LRRC37A3	banned,known,hpa,non_cancer_tissues,m0,multi,exon-exon	0	11	12	28	BOWTIE	17:46152904:-	17:64869166:-	ENSG00000120071	ENSG00000176809	ENSE00002635959	ENSE00003526242	ATAAAGAAAGAAAGGGATAGATGGAATGAGTTTCATCGTGATT*AATTCTCAATCACAATCCTCTGACAACTGTTGAAGATCCATAT	UTR/CDS(truncated)
KANSL1	LRRC37A3	banned,known,hpa,non_cancer_tissues,m0,multi,exon-exon	0	11	4	29	BOWTIE	17:46152904:-	17:64892600:-	ENSG00000120071	ENSG00000176809	ENSE00002635959	ENSE00003547821	ATAAAGAAAGAAAGGGATAGATGGAATGAGTTTCATCGTGATT*AAATTTCCAAGGAAACTATATTTCTTACATTGATGGAAATGTA	UTR/CDS(truncated)
KANSL1	LRRC37A3	banned,known,hpa,non_cancer_tissues,m0,multi,exon-exon	0	11	2	24	BOWTIE	17:46170855:-	17:64869166:-	ENSG00000120071	ENSG00000176809	ENSE00003614505	ENSE00003526242	AAGAACTGACCAGAGCTGATCCCGAGCAGCGTCATGTACCCCT*AATTCTCAATCACAATCCTCTGACAACTGTTGAAGATCCATAT	in-frame
KANSL1	LRRC37A3	banned,known,hpa,non_cancer_tissues,m0,multi	0	11	2	18	BOWTIE+STAR	17:46030419:-	17:64910653:-	ENSG00000120071	ENSG00000176809			TTGTTCCCCCTTCACCCTTCTCTGTTAACCTTGTGCCTGTCTCCTGTATG*AAAAAAAAAAAAAAAAGGGGGGACAATGTTACTCTTCTTCCTTCTAGAAA	UTR/intronic
RAB8A	IL31RA	oncogene,cancer,tumor,m3	0	11	3	28	BOWTIE+STAR	19:16126779:+	5:55854527:+	ENSG00000167461	ENSG00000164509			GCTTATGCCTGTAATCCCAGCAGTTTGGGAGGCTGAGGCGGGCAGATCAC*CTGAGGTCAGAAGTTTGAGACCAGCCTGGCCAACATGGCGAAACTCTGTC	UTR/intronic
SAMD5	SASH1	banned,known,adjacent,hpa,gtex,18cancers,chimerdb3kb,chimerdb3pub,tumor,readthrough,exon-exon	0	11	3	25	BOWTIE	6:147509387:+	6:148390134:+	ENSG00000203727	ENSG00000111961	ENSE00001444606	ENSE00001612635	CCGTGACGGCATCCACCTGAGCAAGCCCCCGTACTCCCGCAAG*GACGGTTCACTGGGAAACATCGATGACCTGGCGCAGCAGTATG	in-frame
AC026412.3	AC233280.1	lincrna,m3	124	10	2	23	BOWTIE+BLAT	5:1610965:+	3:195656096:-	ENSG00000271119	ENSG00000229178			CAGTTATTGGCAATGAGGAATGAGGCCTAAACACTTGTGTGCAGGTTTGT*GTGTGCAGGTTTGTGTGTGCACGTTTAAGTTTTCCCTTGGGGGACATTTC	exonic(no-known-CDS)/exonic(no-known-CDS)
AC233280.1	AC026412.3	lincrna,m3	124	10	3	31	BOWTIE+STAR	3:195655760:-	5:1611285:+	ENSG00000229178	ENSG00000271119			GAGCCTCTTTCTCGGGCAATATGCCCTCCTTATACCTTCTTTGATGAGGC*CTCCATTCAAATATCTGCCCTCTCTTTAATACTGGGGTTTTTACTTTCTT	exonic(no-known-CDS)/exonic(no-known-CDS)
AC233280.1	AC026412.3	lincrna,m3	124	10	2	27	BOWTIE+STAR	3:195655905:-	5:1611144:+	ENSG00000229178	ENSG00000271119			TCCCACTGCAGCTTATGAGGGTCCCAGTTCCTCTGCATCATCACTAGAAC*CTGGGTCGGCCTGTGGTTTTTGTCTGTTTTTAGCCATTTTAATAGATTTG	exonic(no-known-CDS)/exonic(no-known-CDS)
C19MC	RPLP1	banned,known,ribosomal,bodymap2,non_tumor_cells,hpa,m2,multi	0	10	3	32	BOWTIE+STAR	19:53775834:+	15:69455458:+	ENSG09000000001	ENSG00000137818			TAGAGGCTGGTGGAGCTGCTCCAGCTGAGGAGAAGAAAGTGGAAGCAAAG*AAGAATCCGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTGAC	---/CDS(truncated)
IKZF3	SPG7	cancer,m3	88	10	5	30	BOWTIE+STAR	17:39761083:-	16:89503471:+	ENSG00000161405	ENSG00000197912			TAGGCCCATACTCAAAATCGGCCAGATATAAAATGACCTCAGATTTTGAT*CTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGGT	UTR/intronic
IKZF3	SPG7	cancer,m3	88	10	4	39	BOWTIE+STAR	17:39760938:-	16:89547844:+	ENSG00000161405	ENSG00000197912			GCAGAGATGGCGTTTCGCCATACTGCCCAGGCTAGTCTCAAAATCCTGGG*CTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGGG	UTR/intronic
IKZF3	SPG7	cancer,m3	88	10	3	21	BOWTIE+STAR	17:39764953:-	16:89533075:+	ENSG00000161405	ENSG00000197912			GTTGGCAGAGCAAGGGTATAAAGGGGGAAATTGTTTGGCAGCACCAACAG*AAAAAAAAAAAAAAAAAAACACAGCTTTTAATTAAAAAAAGGTCAAGACA	UTR/UTR
IKZF3	SPG7	cancer,m3	88	10	3	21	BOWTIE+STAR	17:39764953:-	16:89501013:+	ENSG00000161405	ENSG00000197912			GTTGGCAGAGCAAGGGTATAAAGGGGGAAATTGTTTGGCAGCACCAACAG*AAAAAAAAAAAAAAAAAAACATAAAACAACAGGGACAGGCCGGGTGTGGT	UTR/intronic
IKZF3	SPG7	cancer,m3	88	10	2	26	BOWTIE+BLAT	17:39761083:-	16:89499937:+	ENSG00000161405	ENSG00000197912			TAGGCCCATACTCAAAATCGGCCAGATATAAAATGACCTCAGATTTTGAT*CTCCTGGGCTCAAGCAATCCTTCTGCCTTTGCCTCCCAAATTGCTGGGTT	UTR/intronic
IKZF3	SPG7	cancer,m3	88	10	2	24	BOWTIE+STAR	17:39761712:-	16:89533075:+	ENSG00000161405	ENSG00000197912			CTGCACTCCAGCCTCGGCAACAAGAGCGAAACTCTGTCTAAAACAAAAAC*AAAAAAAAAAAAAAAAAAACACAGCTTTTAATTAAAAAAAGGTCAAGACA	UTR/UTR
IKZF3	SPG7	cancer,m3	88	10	2	22	BOWTIE+STAR	17:39763595:-	16:89501016:+	ENSG00000161405	ENSG00000197912			GTGTTAAGTTTTTCCTTTAACCACTGAGTTGTGAATGTGAAGAAGGTGGT*AAAAAAAAAAAAAAAACATAAAACAACAGGGACAGGCCGGGTGTGGTGGC	UTR/intronic
IKZF3	SPG7	cancer,m3	88	10	2	21	BOWTIE+STAR	17:39764863:-	16:89498537:+	ENSG00000161405	ENSG00000197912			AAGAGTTCATGGAGAATTGGTGATACAGACCCAAAGCAAATTTGCCAATG*AAAAAAAAAAAAAAAAAAGTCGCCGGGCGCGGTGGCTCATGCCTGTAATC	UTR/UTR
IKZF3	SPG7	cancer,m3	88	10	2	20	BOWTIE+STAR	17:39759901:-	16:89533076:+	ENSG00000161405	ENSG00000197912			GCTCAAGAAGAGAAAAGGGAGTGGTGAAACTTTGTCCTAAAAGTTAGCAC*AAAAAAAAAAAAAAAAAACACAGCTTTTAATTAAAAAAAGGTCAAGACA	UTR/UTR
IKZF3	SPG7	cancer,m3	88	10	2	20	BOWTIE+STAR	17:39759901:-	16:89501014:+	ENSG00000161405	ENSG00000197912			GCTCAAGAAGAGAAAAGGGAGTGGTGAAACTTTGTCCTAAAAGTTAGCAC*AAAAAAAAAAAAAAAAAACATAAAACAACAGGGACAGGCCGGGTGTGGT	UTR/intronic
RPLP1	C19MC	banned,known,ribosomal,bodymap2,non_tumor_cells,hpa,m2,multi	0	10	7	34	BOWTIE+BLAT	15:69455201:+	19:53775643:+	ENSG00000137818	ENSG09000000001			CATGCACATGTATTGCAGGCCCTGGCCAACGTCAACATTGGGAGCCTCAT*TCTGCACGACGATGAGGTGACCGTCACGGAGGATAAGATCAATGCTCTCA	CDS(truncated)/---
RPLP1	C19MC	banned,known,ribosomal,bodymap2,non_tumor_cells,hpa,m2,multi	0	10	2	36	BOWTIE+BLAT;BOWTIE+STAR	15:69455499:+	19:53775591:+	ENSG00000137818	ENSG09000000001			AAAGAAAGAAGAATCCGAGGAGTCTGATGATGACATGGGCTTTGGTCTTT*CCCGCGCCATGGCCTCTGTCTCCGAGCTCGCCTGCATCTACTAGGCGCTC	CDS(truncated)/---
RPLP1	C19MC	banned,known,ribosomal,bodymap2,non_tumor_cells,hpa,m2,multi	0	10	2	33	BOWTIE+STAR	15:69452986:+	19:53775638:+	ENSG00000137818	ENSG09000000001			CTCGCCCGCGCCATGGCCTCTGTCTCCGAGCTCGCCTGCATCTACTCGGC*CTCATTCTGCACGACGATGAGGTGACCGTCACGGAGGATAAGATCAATGC	CDS(truncated)/---
RPLP1	C19MC	banned,known,ribosomal,bodymap2,non_tumor_cells,hpa,m2,multi	0	10	2	21	BOWTIE+STAR	15:69455518:+	19:53780199:+	ENSG00000137818	ENSG09000000001			GAGTCTGATGATGACATGGGCTTTGGTCTTTTTGACTAAACCTCTTTTAT*AAAAAAAAAAAAAAAAAGCTGGCCCCGAGCACGGTGGCTCACTCCTGTAA	UTR/---
RPLP1	C19MC	banned,known,ribosomal,bodymap2,non_tumor_cells,hpa,m2,multi	0	10	2	21	BOWTIE+STAR	15:69455518:+	19:53720714:+	ENSG00000137818	ENSG09000000001			GAGTCTGATGATGACATGGGCTTTGGTCTTTTTGACTAAACCTCTTTTAT*AAAAAAAAAAAAAAAAAGCTGGGCGCTGTGGCTCACGCCTGTAATCCCAC	UTR/---
SIDT2	TAGLN	banned,known,adjacent,conjoing,healthy,cacg,bodymap2,hpa,cancer,1K<gap<10K,readthrough,exon-exon	0	10	5	27	BOWTIE	11:117195915:+	11:117203002:+	ENSG00000149577	ENSG00000149591	ENSE00001678826	ENSE00000991541	CTGGCACTTCCTCTCCTCCATCGCCATGTTCGGGTCCTTCCTG*CTTTCCCCAGACATGGCCAACAAGGGTCCTTCCTATGGCATGA	CDS(truncated)/UTR
ZMYM5	PSPC1	banned,known,healthy,bodymap2,hpa,chimerdb3seq,10K<gap<100K	0	10	4	35	BOWTIE+BLAT;BOWTIE+STAR	13:19824920:-	13:19782791:-	ENSG00000132950	ENSG00000121390			GAAAAATTTTGAAGACTCCATTGTACCAGTTGTGCTTTCCGCAGATCCAG*GCCTGTATCCGGTGTCCGAGGCGAACTCAGTAAGATGATGTTAAGAGGAA	CDS(truncated)/UTR
ZMYM5	PSPC1	banned,known,healthy,bodymap2,hpa,chimerdb3seq,10K<gap<100K	0	10	3	37	BOWTIE+BLAT;BOWTIE+STAR	13:19824920:-	13:19772543:-	ENSG00000132950	ENSG00000121390			GAAAAATTTTGAAGACTCCATTGTACCAGTTGTGCTTTCCGCAGATCCAG*GAATCCAGAACCCTGGCTGAAATTGCAAAAGCAGAGCTGGACGGCACCAT	out-of-frame
AC011455.2	SDHA	lincrna,tumor,m4	125	9	8	37	BOWTIE+STAR	19:38938046:-	5:246263:+	ENSG00000269486	ENSG00000073578			TAATTAACAAGAGAAGCTGAGGCAGAGCTGCGGCTAATCGAAAAGCAAGT*CCATAAAGCCCAAGTAAATAGAATCGATCCAGAGAAGACTCGAGCTGCAG	exonic(no-known-CDS)/intronic
AC011455.2	SDHA	lincrna,tumor,m4	125	9	6	40	BOWTIE+STAR	19:38938043:-	5:246400:+	ENSG00000269486	ENSG00000073578			TTAACAAGAGAAGCTGAGGCAGAGCTGCGGCTAATCGAAAAGCAAGTCCA*TAAAGCCCAAATCAATAGAATCGATCCAGAGAAGACTCGAGCTGCGGCTG	exonic(no-known-CDS)/intronic
AL683807.1	AL683807.2	adjacent,lincrna,10K<gap<100K,readthrough,exon-exon	0	9	6	28	BOWTIE	X:1755985:+	X:1768435:+	ENSG00000223511	ENSG00000234622	ENSE00001667046	ENSE00001632295	AACCCAGAAGTATCCCCCAGGACAAATCATTAAGGGGGAAAAG*AGATGGGGTCTCAGTCTGTGGCCCAGGCTGCAGTGAAGTGGAA	exonic(no-known-CDS)/exonic(no-known-CDS)
ARGFX	AC093267.1	pseudogene,m5	97	9	4	31	BOWTIE+STAR	3:121586233:+	5:122676389:+	ENSG00000186103	ENSG00000240058			TCCCTTCCATCTCAGCCCTTAGACCCTTCCAATTGGGCATGGAACTCTAC*CTTCACTGAGAGTCCCACAGGTGACTTCCAAATGCAAGATACTCAATGGG	CDS(truncated)/exonic(no-known-CDS)
C19MC	SPN	m6	0	9	7	31	BOWTIE+STAR	19:53776871:+	16:29665331:+	ENSG09000000001	ENSG00000197471			CTCCTGACCTAGTGATTCACCTGCCTCGGCCTCCCAAGGTGCTGGGATTG*CAGACATGAGCCTCCGCGCCTTGCCTCCTCACCCACCTCTTCACTCTGAA	---/UTR
C19MC	SPN	m6	0	9	3	28	BOWTIE+STAR	19:53776871:+	16:29669476:+	ENSG09000000001	ENSG00000197471			CTCCTGACCTAGTGATTCACCTGCCTCGGCCTCCCAAGGTGCTGGGATTG*CATGCGTGAGCCACCGTGCCCGACAATAGATGTCTTTTAATTTTCTGGAG	---/UTR
C19MC	SPN	m6	0	9	2	22	BOWTIE+STAR	19:53776860:+	16:29668319:+	ENSG09000000001	ENSG00000197471			CTGGTCTCGAACTCCTGACCTAGTGATTCACCTGCCTCGGCCTCCCAAGG*TGCTGGGACTATAGGCATGAGCCACTGCACCCAGCCACTGCTTCATTCCT	---/UTR
CDH8	SPN	m3	0	9	6	30	BOWTIE+STAR	16:61942224:-	16:29668716:+	ENSG00000150394	ENSG00000197471			TGATCCTTTCACCTTGATCTCCCAAGTACTGGGATTACAGGTGTGAGCCA*GGGATTATAGGTGTGAGCCACTGTGCCCAGGCTTGCCTCAGATATTTGAA	intronic/UTR
CDH8	SPN	m3	0	9	2	31	BOWTIE+STAR	16:61650674:-	16:29666561:+	ENSG00000150394	ENSG00000197471			CTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACA*CGCGCGCGCTCTCCTGCGAACAGAGGCAGGGGGAGAGGGGTTTGCCCTGG	UTR/UTR
CDH8	SPN	m3	0	9	2	23	BOWTIE+STAR	16:61650696:-	16:29666525:+	ENSG00000150394	ENSG00000197471			CTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACA*CACACACACACACACACACACACACACACGCGCGCGCGCGCGCGCTCTCC	UTR/UTR
CHST11	IGH@	banned,known,hpa,m0,multi	0	9	2	29	BOWTIE+BLAT;BOWTIE+STAR	12:104665831:+	14:106880683:-	ENSG00000171310	ENSG09000001018			TTTCCCTTTCTCTTTCTCTCTCTCTGTCTCTTTTTTTTTTTTTTTTTTT*TTTTTTTTTTTTTGTTTTTTTTTTTTTTTGCCAATGGAGGTGAGAAGAAA	intronic/---
FAM86B3P	LINC02014	pseudogene,lincrna,m4	41	9	3	28	BOWTIE+STAR	8:8242000:+	3:130090663:-	ENSG00000173295	ENSG00000248243			TTCCGTGGAAAGGTAAGTTATTGGAGTTTATGCAGTCTGGTATATTAATT*GAGAGCTTTACTTCAAAGAATGTCACGTTTACGATTCAGTCTCACAGACT	exonic(no-known-CDS)/intronic
FAM86B3P	LINC02014	pseudogene,lincrna,m4	41	9	2	39	BOWTIE+STAR	8:8241754:+	3:130090903:-	ENSG00000173295	ENSG00000248243			CCTGGTTCTGTTATTGTGTGGAGGAATGTCTTAGTCTGTTGCTCCTGTGG*GTCGCTAAAGCACGAACCAGGGGTCTTCATCCTTAGAAAGCAGTTAGACA	exonic(no-known-CDS)/exonic(no-known-CDS)
HACL1	COLQ	banned,known,adjacent,healthy,cacg,hpa,1000genomes,chimerdb3seq,10K<gap<100K,readthrough,exon-exon	0	9	4	26	BOWTIE;BOWTIE+STAR	3:15563358:-	3:15489637:-	ENSG00000131373	ENSG00000206561	ENSE00003693947	ENSE00001498676	TATCAACATCATGATTGAGCCACAAGCCACACGGAAGGCCCAG*CCCTTCCCAGCCTGGATCAGAAGAAGCGTGGTGGCCACAAAGC	out-of-frame
LGALS17A	AC093063.1	adjacent,pseudogene,1K<gap<10K,readthrough,exon-exon	0	9	4	29	BOWTIE	19:39685652:+	19:39694464:+	ENSG00000226025	ENSG00000268088	ENSE00001592376	ENSE00003004107	AAATTGGAGAGTGTCACTTTTCTATGACATTATATTGATTAAG*CAATGACCCAGAGCTGCGGGTGGAATTCTACACTGGGACAAAT	exonic(no-known-CDS)/exonic(no-known-CDS)
RASAL3	WIZ	adjacent,1K<gap<10K,readthrough	0	9	3	34	BOWTIE+BLAT;BOWTIE+STAR	19:15451768:-	19:15448367:-	ENSG00000105122	ENSG00000011451			GCCTCAATGGAGACACCACCTGAGCTGCCCATCCTGCCTCATCACACGTG*GCCCACAATGCCCCGCTGAGCCGGTGCAGCAGCTGAGTGGATCCAAGCAG	UTR/UTR
RNF168	BCL9	oncogene,cancer,tumor,m3	0	9	3	35	BOWTIE+STAR	3:196471230:-	1:147537912:+	ENSG00000163961	ENSG00000116128			AGACGGAGTTTCAAAATTTGGATTCATATTCATATGTGGGAAATCCCAGA*TTTTTTTTTTTTTTTTTTTGGAGACAGAGTCTTGCTCTGTCACCCAGGCT	UTR/intergenic
SDHA	AC011455.2	lincrna,tumor,m4	125	9	5	38	BOWTIE+STAR	5:245760:+	19:38938215:-	ENSG00000073578	ENSG00000269486			TTGTGCTACAGAAAGTAGCCATACGTAGGGATCAATTGAAAACATTAAAT*GACTTTCAAAAATTACTAGGGGACATTAATTGGATACGACCTGCTCTAGG	intronic/exonic(no-known-CDS)
SFT2D2	DA750114	m4	0	9	2	36	BOWTIE+BLAT;BOWTIE+STAR	1:168247507:+	9:106086630:+	ENSG00000213064	ENSG09000000004			TGATGGTTTCCAGCTTCATCCATGTCCCTACAAAGGACATGAACTCATCC*TTATGGCTGCATGGTATTCCATGGTGTATATGTGCCACATTTTCTTTATT	UTR/---
SPN	C19MC	m6	0	9	9	30	BOWTIE+BLAT;BOWTIE+STAR	16:29668735:+	19:53779381:+	ENSG00000197471	ENSG09000000001			GGTCCTCCCACCTAAGCTTCCCCAAATACTGGGATTATAGGTGTGAGCCA*GGGATTACAGGTGTGAGCCACTGTGCCCAGCCCTGTCCACATTTTCTAGC	UTR/---
SPN	C19MC	m6	0	9	3	39	BOWTIE+STAR	16:29667546:+	19:53668663:+	ENSG00000197471	ENSG09000000001			GCCGGGTGCGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCAAG*GTGGGCGGATCATGAGGTCGGGAGTTCGAGACCAGCCTGGCCAATATGGT	UTR/---
SPN	C19MC	m6	0	9	3	34	BOWTIE+STAR	16:29665291:+	19:53740131:+	ENSG00000197471	ENSG09000000001			GATGGGGTTTCACCATGTTGGCTAGGCTGGTCTCAAACTCCTGACCTCAG*GTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGAGAATACAGGCGTGAGC	UTR/---
SPN	C19MC	m6	0	9	3	28	BOWTIE+STAR	16:29667562:+	19:53652059:+	ENSG00000197471	ENSG09000000001			CACGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGTGGGCAGATCATGAG*GTCGGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACTCTGTCTCTAC	UTR/---
SPN	C19MC	m6	0	9	2	27	BOWTIE+BLAT	16:29668299:+	19:53776842:+	ENSG00000197471	ENSG09000000001			TCACCATGTTGTCCCGGCTGGTCTCAAACTCCCGGGCACAAGAGATCCAC*CTGCCTCGGCCTCCCAAGGTGCTGGGATTGCAGTGTGAGCCACCACGCCT	UTR/---
SPN	C19MC	m6	0	9	2	20	BOWTIE+STAR	16:29669033:+	19:53774977:+	ENSG00000197471	ENSG09000000001			CAAAAACACAAAAAATTAGCCAGGCGTGGTGGTGCATGCCTGTAGTACCA*GCTGCTTGGGAGGCTGAGGCGGGAGAATCGCTTGAACCTGGAAGATGGTG	UTR/---
SPN	CDH8	m3	0	9	2	21	BOWTIE+STAR	16:29670643:+	16:61917985:-	ENSG00000197471	ENSG00000150394			CATGTTTTTGAAAATTATGTAATGACTTTGGAAAATACCAGCAATATAAT*AAAAAAAAAAAAAAAAAGCAAATAACTTTGACCTCCTGGTTGCCTGGGAA	UTR/intronic
AC022144.1	NEAT1	lincrna,antisense,oncogene,m3	9	8	2	34	BOWTIE+STAR	19:38739449:+	11:65440843:+	ENSG00000267892	ENSG00000245532			GGTCGTGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGATTCCGTCTCA*AAAAAAAAAAAAAAAAAAAAAACCAAGAAGAAAAGGAATGAATTAGAACT	exonic(no-known-CDS)/exonic(no-known-CDS)
ADAMTSL3	IGH@	cancer,m3	0	8	2	40	BOWTIE+STAR	15:83862771:+	14:105960131:-	ENSG00000156218	ENSG09000001014			AATAACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATA*TAACCTTTAATGTAAATGGGCTAAATGCTCCAATTAAAAGACACAGACTG	UTR/---
AGAP5	BMS1P4	banned,known,adjacent,hpa,m0,multi,gap<1K,exon-exon	0	8	2	26	BOWTIE	10:73692043:-	10:73713332:-	ENSG00000172650	ENSG00000271816	ENSE00003612965	ENSE00002439611	AACAGATGTTGTAGAAATAAGAAGAAGCAACTGTACAAACCAT*TGTCAGAGATGGCTTTGGATTCCCCGTTCTGTGTGCTGCTGTC	CDS(truncated)/exonic(no-known-CDS)
CD53	PRPF8	cancer	0	8	7	26	BOWTIE+STAR	1:110899760:+	17:1652728:-	ENSG00000143119	ENSG00000174231			CAAGATCTCATTTCAATTTCTTTATTAGAGGGCCTTATTGATGTGTTCTA*AAAAAAAAAAAAAAAACTAGCCAGGCATGGTGGCATACACCTGTAATC	UTR/intronic
CD53	PRPF8	cancer	0	8	4	29	BOWTIE+STAR	1:110898247:+	17:1683142:-	ENSG00000143119	ENSG00000174231			AAACCCCGTCTCTACTAAAAATACAAAAAATTAACCAGACGTAGTGGCAG*GTGTCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGA	intronic/UTR
DSCC1	TAF2	adjacent,tcga,non_tumor_cells,non_cancer_tissues,18cancers,chimerdb3seq,tcga-cancer,1K<gap<10K,readthrough	0	8	3	30	BOWTIE+BLAT;BOWTIE+STAR	8:119838259:-	8:119832598:-	ENSG00000136982	ENSG00000064313			TTCTCTCTAAGGGAGAAGTGGACAGAAGAAGATATTGCTCCATATATTCA*GAAGCCGGGAAGCCAAGCTCCGCGGGACCGCTTCATGCCGCTGACTGGTG	CDS(truncated)/UTR
MALAT1	CCND2	lincrna,oncogene,cancer	0	8	3	18	BOWTIE+STAR	11:65499951:+	12:4296706:+	ENSG00000251562	ENSG00000118971			AATGAAAAACAAGCTAAGACAAGTATTGGAGAAGTATAGAAGATAGAAAA*AAAAAAAAAAAAAAATTGTAAACATCCCCTTCAGCAGCTTCTCAAGTCCC	exonic(no-known-CDS)/intronic
MALAT1	CCND2	lincrna,oncogene,cancer	0	8	2	38	BOWTIE+STAR	11:65499662:+	12:4303079:+	ENSG00000251562	ENSG00000118971			TGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA*AAACAGAAGCAGCAAATGAAAGAACCGGACAAATAAGGAAGGGCACAAGC	exonic(no-known-CDS)/UTR
NEAT1	AC022144.1	lincrna,antisense,oncogene,m3	9	8	2	21	BOWTIE+STAR	11:65428347:+	19:38739453:+	ENSG00000245532	ENSG00000267892			TGAGGCTCTTCAGTATGCCCAGGTTGGCAGCACTGAGAACCGCAGGAA*AAAAAAAAAAAAAAAAAAAAGATGGAAAGAGTAGAGAGACAGAGACAGAG	exonic(no-known-CDS)/exonic(no-known-CDS)
PMS2	POLR2J3	banned,known,hpa,cancer,tumor,m0,multi	0	8	4	31	BOWTIE+STAR	7:5996374:-	7:102564294:-	ENSG00000122512	ENSG00000168255			ACCACCATGCCCGGCTGATTTTTTGTATTTTTAGTGGAGACGGGGTTTCG*CCATGTTGGCCAGGCTGGTCTCAAACTCCTGCTGGGATCATGGGCGTGAG	intronic/UTR
PMS2	POLR2J3	banned,known,hpa,cancer,tumor,m0,multi	0	8	2	30	BOWTIE+STAR	7:6003690:-	7:102567085:-	ENSG00000122512	ENSG00000168255			GAAACTTTTGGCTTTCGGGGGGAAGCTCTGAGCTCACTTTGTGCACTGAG*AGACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGA	CDS(truncated)/UTR
PMS2	POLR2J3	banned,known,hpa,cancer,tumor,m0,multi,exon-exon	0	8	2	28	BOWTIE+BLAT	7:6003690:-	7:102567083:-	ENSG00000122512	ENSG00000168255			GAAACTTTTGGCTTTCGGGGGGAAGCTCTGAGCTCACTTTGTGCACTGAG*ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGG	in-frame
PMS2	POLR2J3	banned,known,hpa,cancer,tumor,m0,multi,exon-exon	0	8	2	26	BOWTIE	7:6002453:-	7:102567083:-	ENSG00000122512	ENSG00000168255	ENSE00003715574	ENSE00003643284	ACTACCTGTGCGCCATAAGGAATTTCAAAGGAATATTAAGAAG*ACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTT	in-frame
POLR2J3	PMS2	banned,known,hpa,cancer,tumor,m0,multi	0	8	4	40	BOWTIE+STAR	7:102564328:-	7:5996404:-	ENSG00000168255	ENSG00000122512			AGCCTCCCAAATAGCTGGGATTATAGGCGTGCACCACCACGCCTGCCT*TTTTTGTATTTTTAGTGGAGACGGGGTTTCGCCATGTTGCCCAGGCTGGT	UTR/intronic
RPL23AP53	AL732372.2	pseudogene,ribosomal,m3,exon-exon	0	8	3	26	BOWTIE	8:232129:-	1:485208:-	ENSG00000223508	ENSG00000237094	ENSE00003701152	ENSE00001758832	GTGTGCCGTGGGTCCGCGCTGCTTCCACCCAACTTCCTGTTAG*CTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGG	exonic(no-known-CDS)/exonic(no-known-CDS)
RPL23AP53	AL732372.2	pseudogene,ribosomal,m3,exon-exon	0	8	2	29	BOWTIE	8:219290:-	1:485208:-	ENSG00000223508	ENSG00000237094	ENSE00003696815	ENSE00001758832	TAAGACTGACCTGGGGAGACGTGGCTGCAGGCCATTGAGGAAG*CTGCAGGACAAGTTCGAGCATCTTAAAATGATTCAACAGGAGG	exonic(no-known-CDS)/exonic(no-known-CDS)
TPM4	HDGFL3	cancer,m7	41	8	2	25	BOWTIE+STAR	19:16080686:+	15:83188393:-	ENSG00000167460	ENSG00000166503			CCTGTCTCTACTAAAAATACAAAAAAATAGCAAGGCGTGGTGGTGTCCGT*CTGTAGTCCCAGCTACTCAGGAGGCTGAGGCGCGAGAATTGCTTGAACCA	intronic/intronic
TPM4	HDGFL3	cancer,m7	41	8	2	21	BOWTIE+STAR	19:16089114:+	15:83191951:-	ENSG00000167460	ENSG00000166503			AAGAACTCAAGAATGTTACTAACAATCTGAAATCTCTGGAGGCTGCATCT*AAAAAAAAAAAAAAAAGGAGAGATAAGTTACAATAGGATGCATTTAACA	CDS(truncated)/intronic
WWOX	IGK@	cancer,tumor,m4	0	8	2	39	BOWTIE+STAR	16:78195671:+	2:90240727:+	ENSG00000186153	ENSG09000001012			GACCAGCCTGAGCAACATGACGAAACCCTGTCTCTACTAAAAATACAAAA*AAAAAATTAGCCAGGCATAGTGGCAAGAGCCTGTAAACCCAGCTACTAGG	intronic/---
AC078883.1	AC078883.3	adjacent,antisense,10K<gap<100K,readthrough,exon-exon	0	7	3	25	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	2:172495375:-	2:172464574:-	ENSG00000225205	ENSG00000232788	ENSE00001655316	ENSE00001663512	AGCCTTGTTCTGTCTTGTCACACCAACTGTTACTGATGAACAG*GTTTACAATCTTTGAGGCCTGGCTGACTCATGGAACAACTAGG	exonic(no-known-CDS)/exonic(no-known-CDS)
AC141586.1	AC093525.4	pseudogene,antisense	0	7	2	39	BOWTIE+STAR	16:2629390:+	16:2570800:-	ENSG00000215154	ENSG00000261140			CATTTTTACATATCAAACAGTATGGTATTGTGGTTACGCTTTTAAAAAGA*TTGTATTTTAGCGACACATACTGGAATTTTTACAGGGAAAACCCACTGAG	exonic(no-known-CDS)/intronic
AC141586.1	AC093525.4	pseudogene,antisense	0	7	2	38	BOWTIE+STAR	16:2629498:+	16:2570692:-	ENSG00000215154	ENSG00000261140			GGCATCAGGTCACTAGCACCGAGTGAATTTTTTACAATAAGCAGTAATTC*CCCCAGCCCCATGCATCATAGCCAATCCTAAATGAATGCCAATCTGGAAA	exonic(no-known-CDS)/intronic
CBFA2T3	SPN	cancer,m5	98	7	3	40	BOWTIE+STAR	16:88959808:-	16:29665292:+	ENSG00000129993	ENSG00000197471			GATGGAGTTTCACCATGTTGGCTAGGCTGGTCTCGAACTCCTGACCTCGG*GTGATCTACCTGCCTCAGCCTCCCAAAGTGCTGAGATTACAGACATGAGC	intronic/UTR
CBFA2T3	SPN	cancer,m5	98	7	2	26	BOWTIE+STAR	16:88878788:-	16:29668230:+	ENSG00000129993	ENSG00000197471			AGTAGCTGGGATTACAGGCGCCCGCCACCACACCTGGCTAATTTTTGTAT*TTTTTTGTAGAGATGGGGTTTCACCATGTTGTCCCGGCTGGTCTCAAACT	intronic/UTR
CHST11	IGH@	banned,known,hpa,m1,multi	0	7	5	39	BOWTIE+STAR	12:104541122:+	14:106023254:+	ENSG00000171310	ENSG09000000015			TCAGAACATGACTCGTATGTTTGTATTCTGCAGAATCTCTCCCTCTCTCT*CACACACACACACACACACACACACACACACACACACATAGATTCCCACA	intronic/---
IGH@	CHST11	banned,known,hpa,m1,multi	0	7	2	26	BOWTIE+STAR	14:106190946:+	12:104546481:+	ENSG09000000015	ENSG00000171310			GAGGTGGAAGTTGCAGTGAGTCTGGACCCTGTCTCAAAAAAAAAAAAAAA*ATTTAAATTTCCCTTTTAAGTTTTTCTTAGCTAGCATAATAAGGGATAGT	---/intronic
KIR3DX1	AL161457.2	antisense,m3	11	7	3	34	BOWTIE+STAR	19:54538525:+	9:68394341:-	ENSG00000104970	ENSG00000233178			GGGTTCAAGCGATTTTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAG*GCATGCGTCATCATACCTAGCTAATTTGTCCCATAGAATCTCATCTTCTG	UTR/exonic(no-known-CDS)
PTGES2	SLC25A25-AS1	adjacent,antisense,18cancers,1K<gap<10K,readthrough	0	7	3	31	BOWTIE+BLAT;BOWTIE+STAR	9:128122362:-	9:128118118:-	ENSG00000148334	ENSG00000234771			GCAAGGACCGGCCCTTCATGGGGGGCCAGAAGCCGAATCTCGCTGATTTG*AAGGAGATCCGGTTGGCAGCTAAACCGCGCTGGGAACAGGGGCCTGAGTC	CDS(truncated)/exonic(no-known-CDS)
ZNF468	ZNF160	m6	114	7	4	41	BOWTIE+STAR	19:52854084:-	19:53086085:-	ENSG00000204604	ENSG00000170949			CCTTCAGTCCCTCTCATCTCGCTTAGGTTCCGTCTCTCGTGACCCAGTGT*CATGAACTTGGGAAGAGGCTGCACTGGGCATGGTCCTGGGAAGGGCTCAC	CDS(truncated)/UTR
ZNF468	ZNF160	m6,exon-exon	114	7	2	25	BOWTIE	19:52854258:-	19:53075183:-	ENSG00000204604	ENSG00000170949	ENSE00003644211	ENSE00003471812	GAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAG*GTACGGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCAGG	in-frame
ANKRD36	WWOX	cancer,tumor,m3	45	6	2	21	BOWTIE+STAR	2:97245798:+	16:78229254:+	ENSG00000135976	ENSG00000186153			AAATGAAGGACATTGAAAAAATGTACAAAAGTGGATACAATACAATGGAA*AAATGAAAAAAAAAACAGGAATAAATAAAAAGAATAAAAAGAGCCAGGAC	CDS(truncated)/intronic
ANKRD36	WWOX	cancer,tumor,m3	45	6	2	20	BOWTIE+STAR	2:97241479:+	16:79157416:+	ENSG00000135976	ENSG00000186153			CAGTTAAAGCATGAAATACTTGAATTGGAAAAAGAACTCTGTAGTTTGAG*AATGGCCAAAAAAAAAAAAAAGAAAGAAACCACAAAACCATACCTTCTTT	CDS(truncated)/intronic
COQ8B	NUMBL	banned,known,adjacent,healthy,bodymap2,fragments,hpa,gap<1K,readthrough,exon-exon	0	6	5	25	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	19:40692951:-	19:40686995:-	ENSG00000123815	ENSG00000105245	ENSE00003529650	ENSE00003482506	GAAGTCCAGGGACCTCAAATTCCTCACAGGCTTTGAAACCAAG*GGCGGACCCCGGAGGCCTGAGCGGCACCTGCCCCCAGCCCCCT	in-frame
GAS2	AC006299.1	adjacent,antisense,10K<gap<100K,readthrough,exon-exon	0	6	4	28	BOWTIE;BOWTIE+BLAT;BOWTIE+STAR	11:22755953:+	11:22834907:+	ENSG00000148935	ENSG00000246225	ENSE00003594907	ENSE00001970824	CCAAGGAAGATACCGAGTGGGAGAAAAGATCCTCTTCATTAGG*AGTTCCACTCTTTTTGTCGACAATAATATGGCGCCCAAACACG	CDS(truncated)/exonic(no-known-CDS)
OR2T2	AC098483.1	antisense,m3,10K<gap<100K	0	6	7	41	BOWTIE+BLAT;BOWTIE+STAR	1:248449392:+	1:248548764:+	ENSG00000196240	ENSG00000224521			TCCCTGGTAGAAGAACCTGTGACTTCTCTTGGAGATCTCTTCAATTTTCG*GAAGCTGATGCTTACAACAATGGAGATTAGCAATACCTGGACAGAGTTGA	UTR/exonic(no-known-CDS)
OR2T2	AC098483.1	antisense,m3,10K<gap<100K,exon-exon	0	6	2	30	BOWTIE	1:248449392:+	1:248562600:+	ENSG00000196240	ENSG00000224521	ENSE00003813036	ENSE00002382273	TAGAAGAACCTGTGACTTCTCTTGGAGATCTCTTCAATTTTCG*ATGATAAAGAAAAAATGAGGAAATGCTGTGAAGAACTAATAGA	UTR/exonic(no-known-CDS)
STAT6	NRDE2	cancer,m4	0	6	2	20	BOWTIE+STAR	12:57099361:-	14:90271909:-	ENSG00000166888	ENSG00000119720			TCTCTGCCAAAGACCTGTCCATTCGCTCACTGGGGGACCGAATCCGGGAT*AAAAAAAAAAAAAAAAATCTGTTCTGAAATAAAGCATGAGACACCTAGAC	CDS(truncated)/UTR
TMEM161B	AC061975.7	lincrna,m4	71	6	4	40	BOWTIE+STAR	5:88189654:-	17:28233412:-	ENSG00000164180	ENSG00000267259			TTAGGTGAAATTGAGTTACAGCGACAGCTACAGGCTTTAGGAAAAATTAC*ACAATCTCAGCCTGGGTAAATGAGAGATGCCCTGTTAGCTTATTCTCCCC	UTR/exonic(no-known-CDS)
WWOX	ANKRD36	cancer,tumor,m3	45	6	2	22	BOWTIE+STAR	16:78186741:+	2:97163244:+	ENSG00000186153	ENSG00000135976			GAGGCAGAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGG*GCAACAGAGCAAGACTCCATGTCAAAAATAAAAAAAAGAAAGTTGATTGT	intronic/CDS(truncated)
WWOX	ANKRD36	cancer,tumor,m3	45	6	2	22	BOWTIE+STAR	16:78188464:+	2:97163244:+	ENSG00000186153	ENSG00000135976			GAGGCGGAGATTGCAGTGAGCTGGGATTGTGCCACTGCACTCCAGCCTGG*GCAACAGAGCAAGACTCCATGTCAAAAATAAAAAAAAGAAAGTTGATTGT	intronic/CDS(truncated)
WWOX	ANKRD36	cancer,tumor,m3	45	6	2	22	BOWTIE+STAR	16:78458053:+	2:97163244:+	ENSG00000186153	ENSG00000135976			GAGGCGGAGGTTGCAGTGAGCCAAGATGGTGCCACTGCACTCCAGCCTGG*GCAACAGAGCAAGACTCCATGTCAAAAATAAAAAAAAGAAAGTTGATTGT	intronic/CDS(truncated)
AC008770.1	SDHA	tumor,m4	28	5	2	37	BOWTIE+STAR	19:12027244:+	5:249223:+	ENSG00000219665	ENSG00000073578			TTGGAGGCTCTGTGATTTCAATGATGATTGTGCTTTTAATCTGTGTTGTC*TTTGTATAGTCTGCAGATGTGGATCCTGACTCTGCAAGAAGTAGCTCACC	intronic/UTR
AC008770.1	SDHA	tumor,m4	28	5	2	36	BOWTIE+STAR	19:12026071:+	5:248055:+	ENSG00000219665	ENSG00000073578			TTTTTGAGCCTGCCTAAAGGCCAGATGCTATCAGCAGCTGAACAATATCT*AGAAACCAGCTGCAAAGACAGAAGCAGAACAACTGGTTTGGTGGAGAGAC	exonic(no-known-CDS)/intronic
AC023813.2	RSL24D1	pseudogene,m4	84	5	2	40	BOWTIE+STAR	16:48600281:+	15:55192792:-	ENSG00000260033	ENSG00000137876			ACGACTGAAAGGTGTTCAGATTTTGTAAATCTAAATGTCATAAAAACTTT*AAAGAAGCGCAATCCTCGCAAAGTTAGGTGGACCAAAGCATTCCGGAAAG	exonic(no-known-CDS)/CDS(truncated)
AC060780.1	MYOCOS	lincrna,m3	13	5	2	36	BOWTIE+STAR	17:43163262:-	1:171603744:+	ENSG00000267002	ENSG00000283683			CTATGTGTCAGAAAGAGAAAAAATGGCAGTTGGAGTTTTAACCCATACTG*AGGCCCTGGCCAAGGCCAGTGGCCTATCTCTCAAAACAACTAGACAGCGT	exonic(no-known-CDS)/intronic
AC135012.1	IKZF3	lincrna,cancer,m3	11	5	2	22	BOWTIE+BLAT	16:86084612:-	17:39856402:-	ENSG00000261177	ENSG00000161405			AGCTGGGTGTGGTGGTGCATGCCTGTGGTCCCAGCTACTCGGGAGGCTGA*GCAGGAGAATTGCTTGAACCTGCGAGGCCGAGGTTGCAGTGAGTGGAGAT	exonic(no-known-CDS)/intronic
AC135012.1	IKZF3	lincrna,cancer,m3	11	5	2	21	BOWTIE+BLAT	16:86084628:-	17:39760287:-	ENSG00000261177	ENSG00000161405			AAAAAATACAAAAATTAGCTGGGTGTGGTGGTGCATGCCTGTGGTCCCAG*CTACTCGGGAGGCTGACGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGG	exonic(no-known-CDS)/UTR
ARHGEF39	AC008993.1	m3	0	5	7	37	BOWTIE+STAR	9:35675026:-	19:68663:+	ENSG00000137135	ENSG00000282542			GAGGTTGCAGTGAGCCGAGATCGCGCCATTGCACTCCAGCCTGGGCAACA*AGGGTGAACCAGGTCCAGGAAGAAGGTGCAAAGACAGCATTCCAGGTAAA	UTR/exonic(no-known-CDS)
ATP6V0D1	NUP43	m3	23	5	3	33	BOWTIE+STAR	16:67439795:-	6:149725366:-	ENSG00000159720	ENSG00000120253			GGGTTTCACCATCTTGACCAGGCTGGTCTTGAACTGACCTCGTGATCCAC*CTGCCTCAGCCTCCCAAAATGCTGGGATTACAGGCTTGAGCCACTGCTCC	UTR/UTR
C19MC	STAG3		0	5	2	33	BOWTIE+BLAT	19:53779051:+	7:100203759:+	ENSG09000000001	ENSG00000066923			TCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGC*CCGTCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACC	---/intronic
CCDC9	SLFN5	m4	0	5	25	40	BOWTIE+BLAT;BOWTIE+STAR	19:47271736:+	17:35266178:+	ENSG00000105321	ENSG00000166750			CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGC*GCGCGCGCGCACGTGCACATGTGTGTAGGTAGATGGAGGGGGTGATTATT	UTR/UTR
CDK2	RAB5B	banned,known,adjacent,healthy,fragments,hpa,18cancers,cancer,1K<gap<10K,readthrough,exon-exon	0	5	2	25	BOWTIE	12:55971247:+	12:55986869:+	ENSG00000123374	ENSG00000111540	ENSE00003566576	ENSE00003588839	AGTTGTACCTCCCCTGGATGAAGATGGACGGAGCTTGTTATCG*GAGTGTTGAAGCCTGGAAATCCCCTCCCCTTCCCCCTCCCCCC	out-of-frame
CHST11	IGH@	banned,known,hpa,m0,multi	0	5	2	39	BOWTIE+STAR	12:104464072:+	14:106561885:+	ENSG00000171310	ENSG09000000017			TGGAAGCAATGTAGCAAGATTGAAAATGAAGTCTCCTACTTGCACTTTTT*TTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGCAGTG	intronic/---
CHST11	IGH@	banned,known,hpa,m0,multi	0	5	2	24	BOWTIE+STAR	12:104550737:+	14:106564033:+	ENSG00000171310	ENSG09000000017			TTAAAAGTCAGTGTGCTGTTTGGCTAAGAGACACTTCCTCACCTGAAATC*AAAAAAAAAAAAAAAAAGGGAGAGGACGACTTGATGCACCTACATATGGT	intronic/---
CHST11	IGH@	banned,known,hpa,m0,multi	0	5	2	20	BOWTIE+STAR	12:104466441:+	14:106461039:+	ENSG00000171310	ENSG09000000017			CTATTGAGTTCAAGAACAAATTGATGGCAAAGCCGGAGAGTGGACCCTAT*AAAAAAAAAAAAAAAAACCCCGGCACTGCTCCGGCGGCCACTCCGACCCG	intronic/---
CRLF2	CSF2RA	banned,known,similar_reads,oncogene,healthy,ambiguous,chimerdb3pub,cancer,m0,multi	16792	5	2	33	BOWTIE+STAR	X:1136995:-	X:1258239:+	ENSG00000205755	ENSG00000198223			GCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAG*GCAGAATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCAAGATCGT	intergenic/intergenic
CSF2RA	CRLF2	banned,known,similar_reads,oncogene,healthy,ambiguous,chimerdb3pub,cancer,m0,multi	16792	5	5	31	BOWTIE+STAR	X:1282502:+	X:1146505:-	ENSG00000198223	ENSG00000205755			ATTGACCATCTTGAGATGCCAAAGATGTCCACGTCCTAATCCCATGTGGG*AGACAGAATAATGTCCCCAAAGATGTCCACGTCCTAATCCCCATGTGATA	UTR/intergenic
CSF2RA	CRLF2	banned,known,similar_reads,oncogene,healthy,ambiguous,chimerdb3pub,cancer,m0,multi	16792	5	5	31	BOWTIE+STAR	X:1282502:+	X:1147190:-	ENSG00000198223	ENSG00000205755			ATTGACCATCTTGAGATGCCAAAGATGTCCACGTCCTAATCCCATGTGGG*AGACAGAATAATGTCCCCAAAGATGTCCACGTCCTAATCCCCATGTGATA	UTR/intergenic
CSF2RA	CRLF2	banned,known,similar_reads,oncogene,healthy,ambiguous,chimerdb3pub,cancer,m0,multi	16792	5	5	31	BOWTIE+STAR	X:1282502:+	X:1146701:-	ENSG00000198223	ENSG00000205755			ATTGACCATCTTGAGATGCCAAAGATGTCCACGTCCTAATCCCATGTGGG*AGACAGAATAATGTCCCCAAAGATGTCCACGTCCTAATCCCCATGTGATA	UTR/intergenic
CSF2RA	CRLF2	banned,known,similar_reads,oncogene,healthy,ambiguous,chimerdb3pub,cancer,m0,multi	16792	5	5	31	BOWTIE+STAR	X:1282502:+	X:1146946:-	ENSG00000198223	ENSG00000205755			ATTGACCATCTTGAGATGCCAAAGATGTCCACGTCCTAATCCCATGTGGG*AGACAGAATAATGTCCCCAAAGATGTCCACGTCCTAATCCCCATGTGATA	UTR/intergenic
CSF2RA	CRLF2	banned,known,similar_reads,oncogene,healthy,ambiguous,chimerdb3pub,cancer,m0,multi	16792	5	5	31	BOWTIE+STAR	X:1282502:+	X:1146897:-	ENSG00000198223	ENSG00000205755			ATTGACCATCTTGAGATGCCAAAGATGTCCACGTCCTAATCCCATGTGGG*AGACAGAATAATGTCCCCAAAGATGTCCACGTCCTAATCCCCATGTGATA	UTR/intergenic
CSF2RA	CRLF2	banned,known,similar_reads,oncogene,healthy,ambiguous,chimerdb3pub,cancer,m0,multi	16792	5	5	31	BOWTIE+STAR	X:1282502:+	X:1146554:-	ENSG00000198223	ENSG00000205755			ATTGACCATCTTGAGATGCCAAAGATGTCCACGTCCTAATCCCATGTGGG*AGACAGAATAATGTCCCCAAAGATGTCCACGTCCTAATCCCCATGTGATA	UTR/intergenic
CSF2RA	CRLF2	banned,known,similar_reads,oncogene,healthy,ambiguous,chimerdb3pub,cancer,m0,multi	16792	5	3	38	BOWTIE+STAR	X:1282515:+	X:1146296:-	ENSG00000198223	ENSG00000205755			AGATGCCAAAGATGTCCACGTCCTAATCCCATGTGGGAGACAGAATAATG*TCCCCAAAGATGTCCACGTCCTAATCCCCATGTGATAGACAGAATAATGT	UTR/intergenic
DUS4L	BCAP29	banned,known,adjacent,healthy,bodymap2,hpa,chimerdb3pub,1K<gap<10K,readthrough,exon-exon	0	5	2	23	BOWTIE	7:107576592:+	7:107580759:+	ENSG00000105865	ENSG00000075790	ENSE00003520906	ENSE00003577399	TTAAAGGAAGCAGAAAATGTGTGGCGGATTACTGGGACAGATG*GTGTGAAGAAAAAAATGACACTCCAATGGGCTGCAGTGGCAAC	CDS(truncated)/UTR
FOXP1	PAX5	known,similar_reads,oncogene,chimerdb2,cgp,ticdb,ambiguous,fragments,chimerdb3pub,chimerdb3seq,cancer,tumor	7942	5	2	37	BOWTIE+STAR	3:71507762:-	9:36860192:-	ENSG00000114861	ENSG00000196092			AGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCATCTCT*GCTAATTTTTCTATTTTTAGTAGAGATAGGATTTCACCATGTTGGTCAGG	intronic/intronic
HNRNPC	KIAA0586	gtex	0	5	3	40	BOWTIE+BLAT	14:21269298:-	14:58521163:+	ENSG00000092199	ENSG00000100578			ACCCGGGAGTAGGAGACTCAGAATCGAATCTCTTCTCCCTCCCCTTCTTG*AGATTTTTTTGATCTTCAGCTACATTTTTGGCTTTGTGAGAAGCCTCA	UTR/UTR
HNRNPC	KIAA0586	gtex	0	5	2	36	BOWTIE+STAR	14:21211222:-	14:58521995:+	ENSG00000092199	ENSG00000100578			GGAAGGAGAGGATGACAGAGACAGCGCCAATGGCGAGGATGACTCTTAAG*CATAGTGGGGTTTAGAAATCTTATCCCATCATTTCTTTACGTAGGTGCTT	UTR/intronic
HNRNPC	KIAA0586	gtex	0	5	2	27	BOWTIE+STAR	14:21210649:-	14:58522562:+	ENSG00000092199	ENSG00000100578			ATCCTCTAGAAAAATAATTAGTGTTATAGTCTTAAGATTTGTTTTCTAAA*TTGATACTGTGGGTTATTTTTGTGAACAGCCTGATGTTTGGGACCTTTTT	UTR/intronic
IGH@	CHST11	banned,known,hpa,m0,multi	0	5	2	26	BOWTIE+STAR	14:106561933:+	12:104549853:+	ENSG09000000017	ENSG00000171310			CTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGCAGT*GCTGTGATCTCACTATTGCATTCCAGCCTGGGCGACAGAGTGAGACCTCA	---/intronic
IGH@	BACH2	banned,known,cancer,m1,multi	0	5	5	19	BOWTIE+STAR	14:105862206:-	6:90016823:-	ENSG09000001014	ENSG00000112182			TCCGGCACCCACAGCAGGTGGCAGGAAGCAGGTCACCGCGAGAGTCTATT*AAAGAAAAAAAAAAAACACCTGTCAACCTGGAATCTATACCCTTCAAAGA	---/intronic
IGH@	BACH2	banned,known,cancer,m1,multi	0	5	2	25	BOWTIE+STAR	14:105862068:-	6:89930243:-	ENSG09000001014	ENSG00000112182			ACTGAGCAAAACAACACCTGGACAATTTGCGTTTCTAAAATAAGGCGAGG*AAAAAAAAAAAAAAAGGCTTTTCTTTTTAAACAGTTCCACTTTTAAAA	---/UTR
IGK@	ATM	cancer,tumor,m3	0	5	2	20	BOWTIE+STAR	2:89163082:+	11:108222500:+	ENSG09000001010	ENSG00000149311			CCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGT*CCAATACAAGCCGGGCTACGTCCGAGGGTAACAACATGATCAAAACCACA	---/UTR
KIAA0586	HNRNPC	gtex	0	5	2	38	BOWTIE+STAR	14:58522649:+	14:21210557:-	ENSG00000100578	ENSG00000092199			GGACCTTTTTTCCTCAAAATAAACAAGTCCTTATTAAACCAGGAAAAA*AGAAAAAAAAAACCCTGGTTTTTTATTTTTGTATTTTATTATTGTTTACT	intronic/UTR
KIAA0586	HNRNPC	gtex	0	5	2	36	BOWTIE+STAR	14:58522354:+	14:21210852:-	ENSG00000100578	ENSG00000092199			CAGGGAGTACAGTTCTTTTCATTCATACGTAAGTTCAGTAGTTGCTTCCC*CTGCAAAGGCAATCTCATTTAGTTGAGTAGCTCTTGAAAGCAGCTTTGAG	intronic/UTR
MYOCOS	AC060780.1	lincrna,m3	13	5	3	33	BOWTIE+STAR	1:171604377:+	17:43162629:-	ENSG00000283683	ENSG00000267002			ACCTTCCTCAGACTGAGGGCTGTTCCCAGTATATACATCAAGTCACTGAG*GTAGGACAAAAGGTTGCTACAGTCCTATTATTTTATGGTTATTATAAGTG	UTR/exonic(no-known-CDS)
SDHA	AC008770.1	tumor,m4	28	5	2	41	BOWTIE+STAR	5:249199:+	19:12027220:+	ENSG00000073578	ENSG00000219665			AATCCATTAAAATGGATAAAAACACTTGGAAGCTCTGTGATTTCAATGAA*GATTGTGCTTTTAATCTGTGTTGTCTTTGTATAGTCTGCAGATGTGGATC	UTR/intronic
SLFN5	CCDC9	m4	0	5	10	39	BOWTIE+STAR	17:35266146:+	19:47271690:+	ENSG00000166750	ENSG00000105321			TGGTAAAAAGGGATATCAGTAATTAGAGGACCGTGAGACTCAGAGATGTG*TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCG	UTR/UTR
STAG3	C19MC		0	5	8	41	BOWTIE+BLAT;BOWTIE+STAR	7:100199599:+	19:53763105:+	ENSG00000066923	ENSG09000000001			ATGTGCAGGAGAGCACACTGATAGAAATCCTTGTGTCCAGTGCCCGGCAA*CTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCAC	CDS(truncated)/---
STAG3	C19MC		0	5	7	38	BOWTIE+BLAT;BOWTIE+STAR	7:100199599:+	19:53730201:+	ENSG00000066923	ENSG09000000001			ATGTGCAGGAGAGCACACTGATAGAAATCCTTGTGTCCAGTGCCCGGCAA*CTCCTGCCTCAGCCTCCCGAGCAGCTGGGATTACAGGTATGTGCCACCAC	CDS(truncated)/---
STAG3	C19MC		0	5	5	38	BOWTIE+BLAT;BOWTIE+STAR	7:100199599:+	19:53706607:+	ENSG00000066923	ENSG09000000001			ATGTGCAGGAGAGCACACTGATAGAAATCCTTGTGTCCAGTGCCCGGCAA*CTCCTGCCTCAGCCTCCCGAGCAGCTGGGATTACAGGCATATGCCACCAC	CDS(truncated)/---
STAG3	C19MC		0	5	3	24	BOWTIE+BLAT;BOWTIE+STAR	7:100199599:+	19:53725794:+	ENSG00000066923	ENSG09000000001			ATGTGCAGGAGAGCACACTGATAGAAATCCTTGTGTCCAGTGCCCGGCAA*CTCCTGCCTCAGCCTCCCGAGCAGGGTTATAGGCATGTGCCACCACACCT	CDS(truncated)/---
STAG3	C19MC		0	5	3	24	BOWTIE+STAR	7:100199599:+	19:53763683:+	ENSG00000066923	ENSG09000000001			ATGTGCAGGAGAGCACACTGATAGAAATCCTTGTGTCCAGTGCCCGGCAA*CTCCTGCCTCAGCCTCCCGAGCAGCTGGGATTACAGGCATGCATCACCAC	CDS(truncated)/---
AC005829.1	C17ORF58	pseudogene,m3	31	4	3	38	BOWTIE+STAR	17:46267371:+	17:67993174:-	ENSG00000261575	ENSG00000186665			GCGATGAACGGGATAGTGCATGACGTGGACGTGCTGGGCGCGGGCATCTG*GCTGGTGGATCGGGACGGGCTGTACAAGATGAACCGCCTGTACCTCACCC	exonic(no-known-CDS)/CDS(truncated)
AC009163.5	TMEM170A	pseudogene,10K<gap<100K,exon-exon	0	4	3	29	BOWTIE	16:75516203:-	16:75451839:-	ENSG00000262583	ENSG00000166822	ENSE00002602871	ENSE00003646655	TATGTGCCCAGGGATTTTCCTGGACGGGATTGTGAAGTAGCGG*AGATGTGGTATGGTGTATTCCTGTGGGCACTGGTGTCTTCTCT	exonic(no-known-CDS)/CDS(truncated)
AC018630.1	TAS2R19	pseudogene,m3,10K<gap<100K	66	4	7	37	BOWTIE+STAR	12:11048458:-	12:11021772:-	ENSG00000256019	ENSG00000212124			GAATCCTAGGACTCAGCAGAGCAAACTTGTATTCCTGCTTTACCAAACTC*TTGCAATCATGTATCCTTCATTCCACTCATTCATCCTGATTATGGGAAGT	exonic(no-known-CDS)/CDS(truncated)
FBXO25	FAM157B	banned,known,pseudogene,bodymap2,hpa,m0,multi,exon-exon	0	4	7	30	BOWTIE	8:435707:+	9:138243620:+	ENSG00000147364	ENSG00000233013	ENSE00003682552	ENSE00002337959	AAGTGCAATTCAAGATATCCGAAGGTTCAATTATGTGGTCAAA*ATGATGATTATTCCCCACCTTCTAAGAGACAAAGACCAACGAG	CDS(truncated)/exonic(no-known-CDS)
LINC01566	ESD	lincrna,m3	0	4	2	39	BOWTIE+STAR	16:35389990:+	13:46771348:-	ENSG00000259841	ENSG00000139684			AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA*AAAAAAAAAAAAAATTCAAAACATTGGATTTTATAGTGCTAAAAGGGCTT	exonic(no-known-CDS)/UTR
MSANTD2	ESAM	known,adjacent,gliomas,1K<gap<10K,readthrough,exon-exon	0	4	2	18	BOWTIE;BOWTIE+STAR	11:124772994:-	11:124756742:-	ENSG00000120458	ENSG00000149564	ENSE00003565346	ENSE00000991328	AGAGAACATTAAAAATAAAACAAGAGTCTTCTGAAGAAGCACA*GTGTTGTCCTACATCAATGGGGTCACAACAAGCAAACCTGGAG	out-of-frame
NUTM2A	NUTM2B	banned,paralogs,cgp,ambiguous,cancer,m0,multi,exon-exon	2818	4	3	26	BOWTIE	10:87231048:+	10:79710382:+	ENSG00000184923	ENSG00000188199	ENSE00002441741	ENSE00002519104	CGAGCAACTTTGACCGGATGATCTTCTACGAGATGGCGGAAAA*TGTACCTTCCCAGCAAGGCCGGCCCCAAGGCCCCGACTGCCTG	in-frame
PEX26	FGF13	cancer,m3	0	4	2	40	BOWTIE+STAR	22:18089731:+	X:138624824:-	ENSG00000215193	ENSG00000129682			AGTTTTCTTTTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGAGATGGA*GTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCATGTCTCAC	UTR/UTR
ACTR3	PTMA	oncogene,cancer	0	3	3	21	BOWTIE+STAR	2:113949408:+	2:231713284:+	ENSG00000115091	ENSG00000187514			GATCGAGACTCGGTCTCAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAA*AAAAAAAGCAAAAATGACAACAGAAAAACAATCTTATTCCGAGCATTCCA	intronic/UTR
ATP6V0C	AMDHD2	known,adjacent,conjoing,cacg,cell_lines,fragments,gap<1K,readthrough,exon-exon	0	3	2	25	BOWTIE	16:2514182:+	16:2520769:+	ENSG00000185883	ENSG00000162066	ENSE00001309635	ENSE00003563063	TTTTTCGCCGTCATGGGCGCCTCGGCCGCCATGGTCTTCAGCG*GGAGGATCTGTGGGTGCGCGGAGGCCGCATCTTGGACCCAGAG	out-of-frame
AZIN1	RCSD1		0	3	2	21	BOWTIE+STAR	8:102833064:-	1:167668738:+	ENSG00000155096	ENSG00000198771			CTCGCAGTTAATATCATAGCAAAGAAAGTTGTTGAAAATGATAAATTTCC*AAAAAAAAAAAAAAAAGAGGGAGCTGCCAATTCTGCCTGAATGGGGGAA	CDS(truncated)/intronic
AZIN1	RCSD1		0	3	2	19	BOWTIE+STAR	8:102833065:-	1:167670359:+	ENSG00000155096	ENSG00000198771			CGCAGTTAATATCATAGCAAAGAAAGTTGTTGAAAATGATAAATTTC*AAAAAAAAAAAAAAACCACTCGAGCTGTTCAGAGGCTGCCAGACTGACAA	CDS(truncated)/intronic
DST	IGH@	cancer	0	3	2	24	BOWTIE+STAR	6:56553461:-	14:105865661:+	ENSG00000151914	ENSG09000000014			GTCATTAATTAAAGATCATAAAGACTTTAGTAAAACTTTGACCGCTCAGT*AAAAAAAAAAAAAAAAAACCAGTGCTCTCCCTTCCGCTGTTAGCCCCAAA	CDS(truncated)/---
DST	IGH@	cancer	0	3	2	21	BOWTIE+STAR	6:56497915:-	14:105863448:+	ENSG00000151914	ENSG09000000014			AGAAGCAAGCAACCTTCAGAACAAGCTAGAGGTTTTAAATCAACGCTGGC*AAAAAAAAAAAAAAAAAACAGACGGCTGCTAAGTCACCCCCAGGAGTCCA	CDS(truncated)/---
DST	IGH@	cancer	0	3	2	21	BOWTIE+STAR	6:56572829:-	14:105864836:+	ENSG00000151914	ENSG09000000014			CTAAAAACCAAAGTAGAACTGTTTGAGAACCTCTCAGAAAAGCTCCAGAC*AAAAAAAAAAAAAAAAACACACTAAAGCGCAGGCCTGGTCCCCGGCACAT	CDS(truncated)/---
HNRNPA2B1	KIF2A	cancer	0	3	4	23	BOWTIE+STAR	7:26191932:-	5:62485853:+	ENSG00000122566	ENSG00000068796			AAAGTTTTGAAAAGCTATTAGCCAGGATCATGGTGTAATAAGACATAA*AAAAAAAAAAAAAAAAATTAAAGATTCCCAACATTAAGTCAGACAGATAA	UTR/intronic
HNRNPA2B1	KIF2A	cancer	0	3	4	21	BOWTIE+STAR	7:26191931:-	5:62518144:+	ENSG00000122566	ENSG00000068796			AAAGTTTTGAAAAGCTATTAGCCAGGATCATGGTGTAATAAGACATAAC*AAAAAAAAAAAAAAAAATTTGGCCAGGCGCAGTGACTCACGCCTGTAATC	UTR/intronic
HNRNPA2B1	KIF2A	cancer	0	3	2	19	BOWTIE+STAR	7:26191930:-	5:62401504:+	ENSG00000122566	ENSG00000068796			AAGTTTTGAAAAGCTATTAGCCAGGATCATGGTGTAATAAGACATAACG*AAAAAAAAAAAAAAAATTCCCTGTTGAAATACCTAATGTGGTTTCTGTTT	UTR/intronic
HNRNPA2B1	KIF2A	cancer	0	3	2	19	BOWTIE+STAR	7:26191930:-	5:62352154:+	ENSG00000122566	ENSG00000068796			AAAGTTTTGAAAAGCTATTAGCCAGGATCATGGTGTAATAAGACATAACG*AAAAAAAAAAAAAAAATTATATTTTACACACATATTTTAGGAGGATTTC	UTR/intronic
HNRNPA2B1	KIF2A	cancer	0	3	2	19	BOWTIE+STAR	7:26196923:-	5:62518146:+	ENSG00000122566	ENSG00000068796			TGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACTT*AAAAAAAAAAAAAAATTTGGCCAGGCGCAGTGACTCACGCCTGTAATCCT	CDS(truncated)/intronic
HNRNPA2B1	KIF2A	cancer	0	3	2	19	BOWTIE+STAR	7:26196923:-	5:62352155:+	ENSG00000122566	ENSG00000068796			TGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACTT*AAAAAAAAAAAAAAATTATATTTTACACACATATTTTAGGAGGATTTCTT	CDS(truncated)/intronic
HNRNPA2B1	KIF2A	cancer	0	3	2	19	BOWTIE+STAR	7:26196923:-	5:62401505:+	ENSG00000122566	ENSG00000068796			GTTGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACTT*AAAAAAAAAAAAAAATTCCCTGTTGAAATACCTAATGTGGTTTCTGTT	CDS(truncated)/intronic
HNRNPA2B1	KIF2A	cancer	0	3	2	19	BOWTIE+STAR	7:26196923:-	5:62485855:+	ENSG00000122566	ENSG00000068796			TGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACTT*AAAAAAAAAAAAAAATTAAAGATTCCCAACATTAAGTCAGACAGATAAGA	CDS(truncated)/intronic
HNRNPA2B1	KIF2A	cancer	0	3	2	18	BOWTIE+STAR	7:26191929:-	5:62366831:+	ENSG00000122566	ENSG00000068796			AAGTTTTGAAAAGCTATTAGCCAGGATCATGGTGTAATAAGACATAACGT*AAAAAAAAAAAAAAAATTAATATTTGATAGGGTAAATCTTACTACATTGT	UTR/intronic
HNRNPA2B1	KIF2A	cancer	0	3	2	17	BOWTIE+STAR	7:26196921:-	5:62366832:+	ENSG00000122566	ENSG00000068796			TGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACTTTG*AAAAAAAAAAAAAAATTAATATTTGATAGGGTAAATCTTACTACATTGTT	CDS(truncated)/intronic
HNRNPA2B1	KIF2A	cancer	0	3	2	17	BOWTIE+STAR	7:26196921:-	5:62331411:+	ENSG00000122566	ENSG00000068796			TGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACTTTG*AAAAAAAAAAAAAAATTATGTTTTCTGGGATTGCAGGCACGGTGGCATAT	CDS(truncated)/intronic
HSPE1	MOB4	banned,known,adjacent,conjoing,bodymap2,fragments,hpa,1000genomes,m2,multi,10K<gap<100K,readthrough,exon-exon	0	3	2	26	BOWTIE	2:197503128:+	2:197523624:+	ENSG00000115541	ENSG00000115540	ENSE00003580189	ENSE00003583379	TCTCCCAGAATATGGAGGCACCAAAGTAGTTCTAGATGACAAG*GATTTCTATAATTGGCCTGATGAATCCTTTGATGAAATGGACA	in-frame
IGH@	BCL2	known,oncogene,chimerdb2,fragments,chimerdb3kb,cancer,tumor,m0,multi	0	3	2	33	BOWTIE+STAR	14:105685170:+	18:63198947:-	ENSG09000000013	ENSG00000171791			TGTGTGTGAGGTATATCTGTGTTTGTGTGTCTCTGTGTCTGTGTGTGTCT*NNNNNNNNNNNNNNNNNNNNNTGTGTCAGTGTGTGTCTCTGTGTCTGTGTGTGTCTGTATATGTCTGTG	---/intronic
IGH@	BCL2	known,oncogene,chimerdb2,fragments,chimerdb3kb,cancer,tumor,m0,multi	0	3	2	23	BOWTIE+STAR	14:105677824:+	18:63242056:-	ENSG09000000013	ENSG00000171791			GAGTGCACCTGCCTGGGCCGGCCCTGACGGATTTTTTTTTTTTTTTTGAT*NNNNNNNNNNNNNNNNNNNNNAGATCTACACCTTGGAGTCACCCATCTCACAAAATGTCAGCCGGGGTGCT	---/intronic
IGH@	DST	cancer	0	3	3	31	BOWTIE+STAR	14:105960629:+	6:56586163:-	ENSG09000000014	ENSG00000151914			GAATCTAACAATTATGTGTCTTGGAGTTGCTCTTCTCGAGGAGTATCTTT*CAGAAAGTTAACAAGGATACCCAGGAATTGAACTCAGCTCTACACCAAGC	---/intronic
LINC02363	CRLF2	lincrna,oncogene,cancer	21	3	3	20	BOWTIE+BLAT	4:184340757:-	X:1120532:-	ENSG00000180712	ENSG00000205755			AGATCACGCCACTGCACTCCAGCATGGACAACAGAGCGAGACTCCGTCCC*AAAAAAAAAAAAAAAAAAGATACAGAGATTCTGAAAGCAAGAAAGAGAA	exonic(no-known-CDS)/intergenic
MALAT1	LIG3	lincrna,oncogene,cancer	0	3	5	24	BOWTIE+STAR	11:65502811:+	17:34988201:+	ENSG00000251562	ENSG00000005156			TTGGGGAATAAGCATAACCCTGAGATTCTTACTACTGATGAGAACATTAT*AAAAAAAAAAAAAAAATTCTGAGGTTGGTTGGTTTGTTGTTTGCTGGTA	exonic(no-known-CDS)/intronic
MALAT1	LIG3	lincrna,oncogene,cancer	0	3	3	20	BOWTIE+STAR	11:65505913:+	17:34988203:+	ENSG00000251562	ENSG00000005156			AACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTGAGAGGGCTTTTG*AAAAAAAAAAAAAATTCTGAGGTTGGTTGGTTTGTTGTTTGCTGGTAG	exonic(no-known-CDS)/intronic
MALAT1	UBE2B	lincrna,oncogene,cancer	0	3	21	20	BOWTIE+STAR	11:65504861:+	5:134376334:+	ENSG00000251562	ENSG00000119048			ATGCAGGAACACTCAGCAGACACACGTATGCGAAGGGCCAGAGAAGCC*AAAAAAAAAAAAAAAATATATATATATATATACACATATGTACAAAATGA	exonic(no-known-CDS)/intronic
MALAT1	UBE2B	lincrna,oncogene,cancer	0	3	5	20	BOWTIE+STAR	11:65499936:+	5:134376336:+	ENSG00000251562	ENSG00000119048			GAGTTTCAGATAGAAAATGAAAAACAAGCTAAGACAAGTATTGGAGAAGT*AAAAAAAAAAAAAATATATATATATATATACACATATGTACAAAATGA	exonic(no-known-CDS)/intronic
MALAT1	UBE2B	lincrna,oncogene,cancer	0	3	4	19	BOWTIE+STAR	11:65504863:+	5:134378931:+	ENSG00000251562	ENSG00000119048			ATGCAGGAACACTCAGCAGACACACGTATGCGAAGGGCCAGAGAAGCCAG*AAAAAAAAAAAAAAAACAGTGGGGGGATCTAAGTGGGTTGTTAGGTTAAG	exonic(no-known-CDS)/intronic
MALAT1	UBE2B	lincrna,oncogene,cancer	0	3	3	23	BOWTIE+STAR	11:65499318:+	5:134376333:+	ENSG00000251562	ENSG00000119048			AGGAAAAGATAAAAGGTTTCTAAAACATGACGGAGGTTGAGATGAAGC*AAAAAAAAAAAAAAAAATATATATATATATATACACATATGTACAAAATG	exonic(no-known-CDS)/intronic
MALAT1	UBE2B	lincrna,oncogene,cancer	0	3	3	19	BOWTIE+STAR	11:65500595:+	5:134379650:+	ENSG00000251562	ENSG00000119048			CGATTTGGTGAAGGAAGCTAGGAAGAAGGAAGGAGCGCTAACGATTTGGT*AAAAAAAAAAAAAAAGGAAGAAAGAAAGAAAGTACTCCTTTTTTCAAG	exonic(no-known-CDS)/intronic
MALAT1	UBE2B	lincrna,oncogene,cancer	0	3	2	19	BOWTIE+STAR	11:65500178:+	5:134375810:+	ENSG00000251562	ENSG00000119048			AGAAGGGGAAGTTGGTTAAAAATCACATCAAAAAGCTACTAAAAGGACTG*AAAAAAAAAAAAAAAAACTTTATGCTGCTGCTTAGGAAAGATGAAATTGG	exonic(no-known-CDS)/intronic
MANBAL	SRC	banned,known,adjacent,oncogene,tcga,fragments,hpa,non_cancer_tissues,chimerdb3seq,cancer,tumor,10K<gap<100K,readthrough,exon-exon	0	3	3	28	BOWTIE	20:37301413:+	20:37365204:+	ENSG00000101363	ENSG00000197122	ENSE00001461016	ENSE00001460974	TGTGCTGGCCATCATCGTACCCATTCCCAAGTCCCACGAGGCG*AACAGAGAACAGAAGCTCAGAGAAGTGAAGCAACTTGCCCAGC	CDS(truncated)/UTR
NSD2	IGK@	known,oncogene,fragments,cancer,tumor,m0,multi	0	3	2	18	BOWTIE+STAR	4:1951174:+	2:89645485:+	ENSG00000109685	ENSG09000001011			CGAAACACAAACTGAAGTATCTGTCTCATCCAAAAAGTCTGAGCGAGGAG*AAAAAAAAAAAAAGGAGTTTTTATATGTAGGGTACAAAATACTATCTGAC	CDS(truncated)/---
NUP153	NUPL2		0	3	3	19	BOWTIE+STAR	6:17615279:-	7:23189913:+	ENSG00000124789	ENSG00000136243			GATTTTATTATGTAAATCCCATTATTCAAAGTTGCCTAAATCCATTTGGA*AAAAAAAAAAAAAAAAATTTTTTTGATGTTGTATAATAACGTGCCAATGT	UTR/intronic
PTMA	ACTR3	oncogene,cancer	0	3	4	21	BOWTIE+STAR	2:231713036:+	2:113914616:+	ENSG00000187514	ENSG00000115091			CCGCAGATGACACGCGCTCTCCACCACCCAACCCAAACCATGAGAATTTG*AAAAAAAAAAAAAAAAAAGAAAGAAAAAGAAAAGAAATACACTTTCAAAA	UTR/intronic
PTMA	ACTR3	oncogene,cancer	0	3	2	18	BOWTIE+STAR	2:231713259:+	2:113949386:+	ENSG00000187514	ENSG00000115091			CTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACCATGTTCATTATAAT*AAAAAAAAGAAAAAAAAAAAGAAAAAATTGACACATGCCTAATAATTAT	UTR/intronic
PTMA	QRICH1	oncogene,cancer	0	3	4	19	BOWTIE+STAR	2:231713259:+	3:49047497:-	ENSG00000187514	ENSG00000198218			CTCTGTCCTACTTCTGACTTTACTTGTGGTGTGACCATGTTCATTATAAT*AAAAAAAAAAAAAAAAAACATTTAAAAGTGCAGCCAAGGCTGAGAAGCAC	UTR/intronic
PTMA	QRICH1	oncogene,cancer	0	3	4	19	BOWTIE+STAR	2:231713260:+	3:49088634:-	ENSG00000187514	ENSG00000198218			CTGTCCTACTTCTGACTTTACTTGTGGTGTGACCATGTTCATTATAATC*AAAAAAAAAAAAAAAACAGACAAAAGCCTGGTGCAGTGGCTCAGGCATGT	UTR/intronic
PTMA	QRICH1	oncogene,cancer	0	3	3	18	BOWTIE+STAR	2:231713041:+	3:49058344:-	ENSG00000187514	ENSG00000198218			GATGACACGCGCTCTCCACCACCCAACCCAAACCATGAGAATTTGCAACA*AAAAAAAAAAGAACCAAAGTTTTGATATTTCCTTGTTAGACTCCAGC	UTR/intronic
PTMA	QRICH1	oncogene,cancer	0	3	2	18	BOWTIE+STAR	2:231712871:+	3:49078710:-	ENSG00000187514	ENSG00000198218			AAGAAGCAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAAGTT*AAAAAAAAAAAAAAAAGGACAGGTGTGGTGGCTCACGCCTGTAATCTCAG	UTR/intronic
SLC6A20	KLHL6		0	3	2	19	BOWTIE+STAR	3:45757526:-	3:183521147:-	ENSG00000163817	ENSG00000172578			ACATGCGCTGTAATGAATCAAAGTTTAATGGATTTAGGGCTGTGCAGGAT*GTGCTTTGTTAAAAATGTGTTTGCAGGCAGTATGCTTGGTAAAAGTCATC	UTR/UTR
TAF15	AC005261.2	lincrna,oncogene,cancer,tumor	6	3	4	41	BOWTIE+STAR	17:35827576:+	19:57304911:+	ENSG00000270647	ENSG00000268205			AAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGACACGATGGTGG*GCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGACAGGAGAATGGCATGA	intronic/exonic(no-known-CDS)
TBCEL	TECTA	banned,known,adjacent,cosmic,healthy,bodymap2,fragments,hpa,18cancers,chimerdb3kb,cancer,10K<gap<100K,readthrough,exon-exon	0	3	2	22	BOWTIE	11:121060085:+	11:121102665:+	ENSG00000154114	ENSG00000109927	ENSE00003505369	ENSE00001513132	TTCGTTACTATGTGGATGTTCCACAGGAAGAAGTGCCATTCAG*GATGAATTATTCATCATTCCTTAGAATTTGGGTCTCTTTCATC	CDS(truncated)/UTR
UBA2	WTIP	banned,known,adjacent,fragments,hpa,non_cancer_tissues,1000genomes,18cancers,m0,multi,10K<gap<100K,readthrough,exon-exon	0	3	3	25	BOWTIE	19:34467014:+	19:34490376:+	ENSG00000126261	ENSG00000142279	ENSE00003701944	ENSE00001160005	ACCAATGGCAGTGATGATGGAGCTCAGCCCTCCACCTCCACAG*GCATTTGCATCAAGTGTGGGCTTGGCATCTACGGAGCCCAGCA	in-frame
UBE2B	MALAT1	lincrna,oncogene,cancer	0	3	2	19	BOWTIE+STAR	5:134383489:+	11:65504323:+	ENSG00000119048	ENSG00000251562			GCTGGGACTGCAGATGTGTGCCACCATACCCAGCTTTTTTTTTTTTTTTT*CAGACTTCACAGAGAATGCAGTTGTCTTGACTTCAGGTCTGTCTGTTCTG	intronic/exonic(no-known-CDS)
USP7	BTN2A3P	pseudogene,cancer	0	3	2	21	BOWTIE+STAR	16:8917060:-	6:26428224:+	ENSG00000187555	ENSG00000124549			CCCTTTAGCATTACAAAGAGTGTTCTATGAATTACAGCATAGTGATAAAC*AAAAAAAAAAAAAAAAGTAAAAGAGTAGGAGGACAGTTCACCATTATAGA	CDS(truncated)/intronic
BPTF	LRRC37A2	banned,known,fragments,hpa,m0,multi,exon-exon	0	2	5	27	BOWTIE	17:67826337:+	17:46511511:+	ENSG00000171634	ENSG00000238083	ENSE00002689718	ENSE00002680088	GAAAGCAGCTTCAGGAGCCATAGTACCTACAGCAGCACTCCAG*GCTGAAGTGCAATGTTGTGATCTCGGCTCACTGCAACCTCTGC	CDS(truncated)/UTR
BPTF	LRRC37A2	banned,known,fragments,hpa,m0,multi,exon-exon	0	2	3	27	BOWTIE	17:67826337:+	17:46517362:+	ENSG00000171634	ENSG00000238083	ENSE00002689718	ENSE00002373231	GAAAGCAGCTTCAGGAGCCATAGTACCTACAGCAGCACTCCAG*AAATTTCCAAGGAAACTATATTTCTTACATTGATGGAAATGTA	out-of-frame
NCOR2	UBC	banned,known,healthy,tcga,fragments,hpa,gtex,chimerdb3seq,cancer,oesophagus,exon-exon	0	2	4	30	BOWTIE	12:124567308:-	12:124913774:-	ENSG00000196498	ENSG00000150991	ENSE00001798415	ENSE00001406973	AGCGCGCCCCAAGCCCGGGCGCCACCGCTGCCACCTCCGCGAG*ACAATGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCA	UTR/UTR
NFATC3	PLA2G15	banned,known,adjacent,healthy,bodymap2,fragments,hpa,chimerdb3seq,cancer,10K<gap<100K,readthrough,exon-exon	0	2	2	23	BOWTIE	16:68191775:+	16:68249290:+	ENSG00000072736	ENSG00000103066	ENSE00003583006	ENSE00003644749	AACTTTGCAACCATTGGTCTGCAGGACATCACTTTAGATGATG*TCCCTGGTGATTTGGGTAACCAACTGGAAGCCAAGCTGGACAA	in-frame
RRM2	C2ORF48	banned,known,adjacent,lincrna,conjoing,cacg,non_tumor_cells,fragments,hpa,1000genomes,1K<gap<10K,readthrough,exon-exon	0	2	2	28	BOWTIE	2:10129154:+	2:10141854:+	ENSG00000171848	ENSG00000163009	ENSE00003659027	ENSE00001489842	GTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAG*GTGCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCC	CDS(truncated)/exonic(no-known-CDS)
SAV1	GYPB	banned,known,hpa,chimerdb3seq,cancer,m0,multi,exon-exon	0	1	6	29	BOWTIE	14:50665179:-	4:144001283:-	ENSG00000151748	ENSG00000250361	ENSE00001246769	ENSE00003580166	CTCTTCCAAAGAATGCCACAGAATCAGGGGAGGCATGCTTCAG*AAATTGTGAGCATATCAGCATTAAGTACCACTGAGGTGGCAAT	in-frame
VPS13B	STK3	banned,known,gtex,gliomas,chimerdb3seq,exon-exon	0	1	2	29	BOWTIE	8:99275254:+	8:98579789:-	ENSG00000132549	ENSG00000104375	ENSE00001285840	ENSE00003461113	ACAATCCAAGTTCCACAATATATTGACTACTGCCACAATTCCG*CATCCTTTTATCAAGAATGCCAAACCTGTATCAATATTAAGAG	out-of-frame
