# Ignore generated folders
BioBatchNet/saved/
BioBatchNet/Results/
BioBatchNet/logger/
BioBatchNet/wandb/

Baseline/results/
Baseline/notebook/
Baseline/bash/
Baseline/scib/

CPC/results/
CPC/CPC_main.py
CPC/CPC_experiment/IMMU_raw.ipynb
CPC/CPC_experiment/IMMU_scvi.ipynb

Data/
data/
csf_log/
Logs/
Results/
bash/
Evaluation/
saved/
wandb/
BaselineResults/


# Ignore Python virtual environments
venv/
env/

# Ignore Python cache files
__pycache__/
*.pyc
*.pyo
*.pyd

# Ignore Jupyter Notebook checkpoints
.ipynb_checkpoints/

# Ignore OS generated files
.DS_Store
Thumbs.db

# Ignore IDE/editor configuration files
.vscode/
.idea/
*.sublime-workspace
*.sublime-project

# Ignore log files
*.log

# Ignore environment configuration files
*.env

# Build and packaging artifacts
dist/
build/
*.egg-info/

# Test, coverage, and tooling caches
.pytest_cache/
.mypy_cache/
.tox/
htmlcov/
.coverage
coverage.xml

# Training/checkpoint outputs (project-specific)
temp_training/
log/
**/fig/

