.gitignore
LICENSE
MANIFEST.in
README.md
USAGE.md
environment.yml
publish.sh
pyproject.toml
requirements.txt
tutorial.ipynb
Baseline/evaluation.py
Baseline/logger_config.py
Baseline/run_baseline.py
Baseline/run_for_visualization.py
Baseline/run_utils.py
Baseline/utils.py
Baseline/visulization.py
CPC/CPC_trainer.py
CPC/comparison_experiment.py
CPC/dataset.py
CPC/model.py
CPC/trainer.py
CPC/utils.py
CPC/CPC_experiment/Damond_experiment/Damond_CPC.ipynb
CPC/CPC_experiment/Hoch_experiment/Hoch_CPC.ipynb
CPC/CPC_experiment/IMMU_experiment/IMMU_CPC.ipynb
CPC/CPC_experiment/IMMU_experiment/IMMU_raw.ipynb
CPC/CPC_experiment/IMMU_experiment/IMMU_scvi.ipynb
CPC/DEC_experiment/DEC_Damond.ipynb
CPC/DEC_experiment/DEC_Hoch.ipynb
CPC/DEC_experiment/DEC_IMMU.ipynb
biobatchnet/__init__.py
biobatchnet/api.py
biobatchnet/imc.py
biobatchnet/parse_config.py
biobatchnet/run.sh
biobatchnet/scrna.py
biobatchnet.egg-info/PKG-INFO
biobatchnet.egg-info/SOURCES.txt
biobatchnet.egg-info/dependency_links.txt
biobatchnet.egg-info/requires.txt
biobatchnet.egg-info/top_level.txt
biobatchnet/config/__init__.py
biobatchnet/config/IMC/Damond.yaml
biobatchnet/config/IMC/Hoch.yaml
biobatchnet/config/IMC/IMMUcan.yaml
biobatchnet/config/IMC/base_imc.yaml
biobatchnet/config/scRNA/base_rna.yaml
biobatchnet/config/scRNA/macaque.yaml
biobatchnet/config/scRNA/mousebrain.yaml
biobatchnet/config/scRNA/pancreas.yaml
biobatchnet/models/__init__.py
biobatchnet/models/model.py
biobatchnet/models/modules.py
biobatchnet/models/VampPrior/nn.py
biobatchnet/models/VampPrior/utils.py
biobatchnet/models/VampPrior/vampprior.py
biobatchnet/utils/__init__.py
biobatchnet/utils/dataset.py
biobatchnet/utils/evaluation.py
biobatchnet/utils/loss.py
biobatchnet/utils/trainer.py
biobatchnet/utils/user_dataset.py
biobatchnet/utils/util.py