.gitattributes
.gitignore
.pre-commit-config.yaml
.readthedocs.yml
LICENSE
README.md
developer_notes.md
pyproject.toml
.github/PULL_REQUEST_TEMPLATE.md
.github/dependabot.yml
.github/release.yml
.github/ISSUE_TEMPLATE/bugs.md
.github/ISSUE_TEMPLATE/features.md
.github/PULL_REQUEST_TEMPLATE/new_matcher_metric.md
.github/workflows/benchmark-pr.py
.github/workflows/benchmark-report.yml
.github/workflows/ci.yml
docs/Makefile
docs/make.bat
docs/source/cli.md
docs/source/conf.py
docs/source/glossary.md
docs/source/index.md
docs/source/_static/css/tablefix.css
docs/source/examples/ctc.nblink
docs/source/matchers/matchers.md
docs/source/metrics/basic.md
docs/source/metrics/chota.md
docs/source/metrics/complete_tracks.md
docs/source/metrics/ctc.md
docs/source/metrics/divisions.md
docs/source/metrics/metrics.md
docs/source/metrics/track_overlap.md
docs/source/test_cases/divisions.md
docs/source/test_cases/errors.md
docs/source/test_cases/index.md
docs/source/test_cases/larger_examples.md
docs/source/test_cases/matchers.md
docs/source/track_errors/basic.md
docs/source/track_errors/ctc.md
docs/source/track_errors/divisions.md
examples/ctc.ipynb
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask000.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask001.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask002.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask003.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask004.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask005.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask006.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask007.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask008.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask009.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask010.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask011.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask012.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask013.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask014.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask015.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask016.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask017.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask018.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask019.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask020.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask021.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask022.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask023.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask024.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask025.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask026.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask027.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask028.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask029.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask030.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask031.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask032.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask033.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask034.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask035.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask036.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask037.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask038.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask039.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask040.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask041.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask042.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask043.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask044.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask045.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask046.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask047.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask048.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask049.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask050.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask051.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask052.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask053.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask054.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask055.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask056.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask057.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask058.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask059.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask060.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask061.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask062.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask063.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask064.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask065.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask066.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask067.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask068.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask069.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask070.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask071.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask072.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask073.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask074.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask075.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask076.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask077.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask078.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask079.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask080.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask081.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask082.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask083.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask084.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask085.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask086.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask087.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask088.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask089.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask090.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/mask091.tif
examples/sample-data/Fluo-N2DL-HeLa/01_RES/res_track.txt
scripts/download_test_data.py
scripts/test_case_report.py
src/traccuracy/__init__.py
src/traccuracy/_run_metrics.py
src/traccuracy/_tracking_graph.py
src/traccuracy/cli.py
src/traccuracy/utils.py
src/traccuracy.egg-info/PKG-INFO
src/traccuracy.egg-info/SOURCES.txt
src/traccuracy.egg-info/dependency_links.txt
src/traccuracy.egg-info/entry_points.txt
src/traccuracy.egg-info/requires.txt
src/traccuracy.egg-info/top_level.txt
src/traccuracy/loaders/__init__.py
src/traccuracy/loaders/_ctc.py
src/traccuracy/loaders/_geff.py
src/traccuracy/loaders/_point.py
src/traccuracy/matchers/__init__.py
src/traccuracy/matchers/_base.py
src/traccuracy/matchers/_compute_overlap.py
src/traccuracy/matchers/_ctc.py
src/traccuracy/matchers/_iou.py
src/traccuracy/matchers/_matched.py
src/traccuracy/matchers/_point.py
src/traccuracy/matchers/_point_seg.py
src/traccuracy/metrics/__init__.py
src/traccuracy/metrics/_base.py
src/traccuracy/metrics/_basic.py
src/traccuracy/metrics/_cca.py
src/traccuracy/metrics/_chota.py
src/traccuracy/metrics/_complete_tracks.py
src/traccuracy/metrics/_ctc.py
src/traccuracy/metrics/_divisions.py
src/traccuracy/metrics/_results.py
src/traccuracy/metrics/_track_overlap.py
src/traccuracy/track_errors/__init__.py
src/traccuracy/track_errors/_basic.py
src/traccuracy/track_errors/_ctc.py
src/traccuracy/track_errors/_divisions.py
tests/__init__.py
tests/bench.py
tests/test_cli.py
tests/test_run_metrics.py
tests/test_tracking_graph.py
tests/test_utils.py
tests/examples/graphs.py
tests/examples/larger_examples.py
tests/examples/segs.py
tests/loaders/__init__.py
tests/loaders/test_ctc.py
tests/loaders/test_geff.py
tests/loaders/test_point.py
tests/matchers/__init__.py
tests/matchers/test_base.py
tests/matchers/test_compute_overlap.py
tests/matchers/test_ctc.py
tests/matchers/test_iou.py
tests/matchers/test_matched.py
tests/matchers/test_point.py
tests/matchers/test_point_seg.py
tests/metrics/__init__.py
tests/metrics/test_base.py
tests/metrics/test_basic.py
tests/metrics/test_cca.py
tests/metrics/test_chota.py
tests/metrics/test_complete_tracks.py
tests/metrics/test_ctc_metrics.py
tests/metrics/test_divisions.py
tests/metrics/test_track_overlap_metrics.py
tests/metrics/test_weighted_error_sums.py
tests/track_errors/__init__.py
tests/track_errors/test_basic.py
tests/track_errors/test_ctc_errors.py
tests/track_errors/test_divisions.py