Metadata-Version: 2.4
Name: mhd-model
Version: 0.1.31
Summary: MetabolomicsHub Common Data Model
Author-email: MetabolomicsHub Team <help@metabolomicshub.org>
License-Expression: Apache-2.0
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: bioregistry>=0.12.19
Requires-Dist: charset-normalizer>=3.4.2
Requires-Dist: dependency-injector>=4.48.1
Requires-Dist: email-validator>=2.2.0
Requires-Dist: httpx>=0.28.1
Requires-Dist: jsonpath-ng>=1.7.0
Requires-Dist: jsonschema>=4.24.0
Requires-Dist: mkdocs-mermaid2-plugin>=1.2.2
Requires-Dist: pydantic>=2.11.7
Requires-Dist: python-dateutil>=2.9.0.post0
Requires-Dist: pytz>=2025.2
Requires-Dist: pyyaml>=6.0.2
Requires-Dist: reachable>=0.7.0
Provides-Extra: neo4j
Requires-Dist: neo4j>=5.28.2; extra == "neo4j"
Dynamic: license-file

# MetabolomicsHub Common Data Model and Utility Tools (mhd-model)


You can find documentation [here](https://metabolomicshub.github.io/mhd-model/)


## Development Environment


Development environment for linux or mac

```bash

# install python package manager uv
curl -LsSf https://astral.sh/uv/install.sh | sh

# add $HOME/.local/bin to your PATH, either restart your shell or run
export PATH=$HOME/.local/bin:$PATH

# install git from https://git-scm.com/downloads
# Linux command
apt update; apt install git -y

# Mac command
# brew install git

# clone project from github
git clone https://github.com/MetabolomicsHub/mhd_model.git

cd mhd-model

# install python if it is not installed
uv python install 3.12

# install python dependencies
uv sync

# install pre-commit to check repository integrity and format checking
uv run pre-commit

# open your IDE (vscode, pycharm, etc.) and set python interpreter as .venv/bin/python

```

## Commandline Usage


```bash
# you can use any python version >= 3.12
pip install mhd-model

mhd-model


```
