OctopuSV Analysis Report

Input Information

Input File	{{ input_file }}
Output File	{{ output_file }}

SV Type Distribution

{% for type, (count, percentage) in sv_types.items() %}

{{ "%.2f"|format(percentage) }}%

{% endfor %}

Size Statistics

Total SVs

Size Range

{{ min_size }} - {{ max_size }} bp

Mean Size

{{ "%.2f"|format(mean_size) }} bp

Size Distribution

{% for range, count in size_distribution.items() %}

{% endfor %}

Quality Metrics

Average QUAL

Average Read Support

Filter Status

{% for status, (count, percentage) in filter_status.items() %}

{{ "%.2f"|format(percentage) }}%

{% endfor %}

Genotype Distribution

{% if sample_genotypes %} {% for sample_name, genotypes in sample_genotypes.items() %}

{{ sample_name }} Genotypes

{% for genotype, (count, percentage) in genotypes.items() %}

{{ "%.2f"|format(percentage) }}%

{% endfor %}

{% endfor %} {% if population_genotypes %}

Overall Population

{% for genotype, (count, percentage) in population_genotypes.items() %}

{{ "%.2f"|format(percentage) }}%

{% endfor %}

{% endif %} {% elif genotype_dist %}

{% for genotype, (count, percentage) in genotype_dist.items() %}

{{ "%.2f"|format(percentage) }}%

{% endfor %}

{% else %}

No genotype data available

{% endif %}

{% if sv_distribution_plot_base64 %}

Structural Variant Distribution

Distribution of structural variants by type

{% endif %} {% if chromosome_coverage_plot_base64 %}

Chromosome Coverage

Coverage distribution across chromosomes

{% endif %} {% if size_distribution_plot_base64 %}

Size Distribution

Size distribution of detected structural variants

{% endif %} {% if additional_plots %}

Additional Analysis

{% for plot in additional_plots %}

{% endfor %}

{% endif %}