.gitattributes
.gitignore
CLAUDE.md
LICENSE
PRODUCT_PLAN.md
PROMPT_WITH_TEMPLATE.md
README.md
pyproject.toml
.github/FUNDING.yml
docs/CHANGELOG.md
docs/PRD.md
reference_renamer/__init__.py
reference_renamer/__main__.py
reference_renamer.egg-info/PKG-INFO
reference_renamer.egg-info/SOURCES.txt
reference_renamer.egg-info/SOURCES.txt.bak
reference_renamer.egg-info/dependency_links.txt
reference_renamer.egg-info/dependency_links.txt.bak
reference_renamer.egg-info/entry_points.txt
reference_renamer.egg-info/entry_points.txt.bak
reference_renamer.egg-info/requires.txt
reference_renamer.egg-info/requires.txt.bak
reference_renamer.egg-info/top_level.txt
reference_renamer.egg-info/top_level.txt.bak
reference_renamer/api/arxiv.py
reference_renamer/api/ollama.py
reference_renamer/api/semantic_scholar.py
reference_renamer/cli/main.py
reference_renamer/core/change_logger.py
reference_renamer/core/content_extractor.py
reference_renamer/core/file_processor.py
reference_renamer/core/filename_generator.py
reference_renamer/core/metadata_enricher.py
reference_renamer/utils/citations.py
reference_renamer/utils/exceptions.py
reference_renamer/utils/logging.py
snippets/FrancescaAicardi_2015_Tied_Links_X_X_X.py
snippets/FrancescaAicardi_2015_Tied_Links_X_X_X_1.py
snippets/FrancescaAicardi_2015_Tied_Links_X_X_X_2.py
snippets/FrancescaAicardi_2015_Tied_Links_X_X_X_3.py
snippets/FrancescaAicardi_2015_Tied_Links_X_X_X_4.py
snippets/FrancescaAicardi_2015_Tied_Links_X_X_X_5.py
snippets/FrancescaAicardi_2015_Tied_Links_X_X_X_6.py
snippets/FrancescaAicardi_2015_Tied_Links_X_X_X_7.py
snippets/FrancescaAicardi_2015_Tied_Links_X_X_X_8.py
tests/__init__.py
tests/conftest.py
tests/test_cli.py
tests/test_filename_generator.py