Metadata-Version: 2.4
Name: gpsea
Version: 0.9.10
Summary: Discover genotype-phenotype correlations with GA4GH phenopackets
Author-email: Lauren Rekerle <lauren.rekerle@jax.org>, Daniel Danis <daniel.danis@bih-charite.de>, Peter Robinson <peter.robinson@bih-charite.de>
License: MIT License
        
        Copyright (c) 2025, Lauren Rekerle, Daniel Danis, Peter N Robinson
        
        Permission is hereby granted, free of charge, to any person obtaining a copy
        of this software and associated documentation files (the "Software"), to deal
        in the Software without restriction, including without limitation the rights
        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
        copies of the Software, and to permit persons to whom the Software is
        furnished to do so, subject to the following conditions:
        
        The above copyright notice and this permission notice shall be included in all
        copies or substantial portions of the Software.
        
        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
        LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
        SOFTWARE.
Project-URL: homepage, https://github.com/P2GX/gpsea
Project-URL: repository, https://github.com/P2GX/gpsea.git
Project-URL: documentation, https://P2GX.github.io/gpsea/stable
Project-URL: bugtracker, https://github.com/P2GX/gpsea/issues
Keywords: Global Alliance for Genomics and Health,GA4GH Phenopacket Schema,Human Phenotype Ontology,GA4GH,Genotype-phenotype correlation,HPO
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Development Status :: 3 - Alpha
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: hpo-toolkit>=0.3.0
Requires-Dist: stairval>=0.2.1
Requires-Dist: Jinja2<4.0.0,>=3.1.4
Requires-Dist: phenopackets>=2.0.2.post4
Requires-Dist: pandas<3.0.0,>=2.0.0
Requires-Dist: phenopacket-store-toolkit>=0.1.2
Requires-Dist: requests<3.0,>=2.25.0
Requires-Dist: scipy<2.0,>=1.10
Requires-Dist: statsmodels>=0.13.0
Requires-Dist: numpy>=1.23
Requires-Dist: matplotlib<4.0,>=3.2.0
Requires-Dist: ratelimit<3,>=2.2.1
Requires-Dist: tqdm>=4.60
Provides-Extra: test
Requires-Dist: pytest<8.0.0,>=7.0.0; extra == "test"
Requires-Dist: ruff==0.12.1; extra == "test"
Provides-Extra: docs
Requires-Dist: sphinx>=7.0.0; extra == "docs"
Requires-Dist: sphinx-rtd-theme>=1.3.0; extra == "docs"
Requires-Dist: sphinx-rtd-dark-mode>=1.3.0; extra == "docs"
Requires-Dist: sphinx-copybutton>=0.5.0; extra == "docs"
Dynamic: license-file

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GPSEA (Genotypes and Phenotypes - Statistical Evaluation of Associations) is a Python package for finding genotype-phenotype associations.

See our documentation for the [setup](https://p2gx.github.io/gpsea/stable/setup.html) instructions,
a [tutorial](https://p2gx.github.io/gpsea/stable/tutorial.html) with an end-to-end genotype-phenotype association analysis,
and a comprehensive [user guide](https://p2gx.github.io/gpsea/stable/user-guide/index.html) with everything else.

The documentation comes in two flavors:

- [Stable documentation](https://p2gx.github.io/gpsea/stable/) (last release on `main` branch)
- [Latest documentation](https://p2gx.github.io/gpsea/latest) (bleeding edge, latest commit on `develop` branch)
