LICENSE
MANIFEST.in
README.md
pyproject.toml
src/gpsea/__init__.py
src/gpsea/config.py
src/gpsea/io.py
src/gpsea/py.typed
src/gpsea/util.py
src/gpsea.egg-info/PKG-INFO
src/gpsea.egg-info/SOURCES.txt
src/gpsea.egg-info/dependency_links.txt
src/gpsea.egg-info/requires.txt
src/gpsea.egg-info/top_level.txt
src/gpsea/analysis/__init__.py
src/gpsea/analysis/_base.py
src/gpsea/analysis/_partition.py
src/gpsea/analysis/_util.py
src/gpsea/analysis/clf/__init__.py
src/gpsea/analysis/clf/_api.py
src/gpsea/analysis/clf/_counter.py
src/gpsea/analysis/clf/_gt_classifiers.py
src/gpsea/analysis/clf/_pheno.py
src/gpsea/analysis/clf/_test__gt_classifiers.py
src/gpsea/analysis/clf/_util.py
src/gpsea/analysis/mtc_filter/__init__.py
src/gpsea/analysis/mtc_filter/_impl.py
src/gpsea/analysis/pcats/__init__.py
src/gpsea/analysis/pcats/_config.py
src/gpsea/analysis/pcats/_impl.py
src/gpsea/analysis/pcats/stats/__init__.py
src/gpsea/analysis/pcats/stats/_stats.py
src/gpsea/analysis/pcats/stats/_test__stats.py
src/gpsea/analysis/predicate/__init__.py
src/gpsea/analysis/predicate/_api.py
src/gpsea/analysis/predicate/_predicates.py
src/gpsea/analysis/predicate/_variant.py
src/gpsea/analysis/pscore/__init__.py
src/gpsea/analysis/pscore/_api.py
src/gpsea/analysis/pscore/_hpo.py
src/gpsea/analysis/pscore/_measurement.py
src/gpsea/analysis/pscore/stats/__init__.py
src/gpsea/analysis/pscore/stats/_stats.py
src/gpsea/analysis/temporal/__init__.py
src/gpsea/analysis/temporal/_api.py
src/gpsea/analysis/temporal/_base.py
src/gpsea/analysis/temporal/_util.py
src/gpsea/analysis/temporal/endpoint/__init__.py
src/gpsea/analysis/temporal/endpoint/_impl.py
src/gpsea/analysis/temporal/stats/__init__.py
src/gpsea/analysis/temporal/stats/_api.py
src/gpsea/analysis/temporal/stats/_impl.py
src/gpsea/model/__init__.py
src/gpsea/model/_base.py
src/gpsea/model/_cohort.py
src/gpsea/model/_gt.py
src/gpsea/model/_phenotype.py
src/gpsea/model/_protein.py
src/gpsea/model/_temporal.py
src/gpsea/model/_test_gt.py
src/gpsea/model/_test_temporal.py
src/gpsea/model/_test_tx.py
src/gpsea/model/_tx.py
src/gpsea/model/_variant.py
src/gpsea/model/_variant_effects.py
src/gpsea/model/genome/GCF_000001405.25_GRCh37.p13_assembly_report.tsv
src/gpsea/model/genome/GCF_000001405.39_GRCh38.p13_assembly_report.tsv
src/gpsea/model/genome/__init__.py
src/gpsea/model/genome/_builds.py
src/gpsea/model/genome/_genome.py
src/gpsea/model/genome/_test_builds.py
src/gpsea/model/genome/_test_genome.py
src/gpsea/preprocessing/__init__.py
src/gpsea/preprocessing/_api.py
src/gpsea/preprocessing/_caching.py
src/gpsea/preprocessing/_config.py
src/gpsea/preprocessing/_generic.py
src/gpsea/preprocessing/_patient.py
src/gpsea/preprocessing/_phenopacket.py
src/gpsea/preprocessing/_test__caching.py
src/gpsea/preprocessing/_test__phenopacket.py
src/gpsea/preprocessing/_uniprot.py
src/gpsea/preprocessing/_vep.py
src/gpsea/preprocessing/_vv.py
src/gpsea/view/__init__.py
src/gpsea/view/_base.py
src/gpsea/view/_config.py
src/gpsea/view/_draw_variants.py
src/gpsea/view/_formatter.py
src/gpsea/view/_phenotype_analysis.py
src/gpsea/view/_protein_visualizable.py
src/gpsea/view/_protein_visualizer.py
src/gpsea/view/_txp.py
src/gpsea/view/_viewers.py
src/gpsea/view/templates/all_variants.html
src/gpsea/view/templates/cohort.html
src/gpsea/view/templates/disease.html
src/gpsea/view/templates/minibase.html
src/gpsea/view/templates/protein.html
src/gpsea/view/templates/stats.html
tests/test_config.py
tests/test_generate_doc_cohorts.py
tests/test_io.py
tests/test_predicates.py
tests/test_util.py