LICENSE
README-pypi.md
README.md
pyproject.toml
CheckAMG/__init__.py
CheckAMG/__main__.py
CheckAMG/files/AMGs.tsv
CheckAMG/files/APGs.tsv
CheckAMG/files/AReGs.tsv
CheckAMG/files/FOAM.tsv
CheckAMG/files/FOAM_cutoffs.csv
CheckAMG/files/KEGG_cutoffs.csv
CheckAMG/files/false_amgs.csv
CheckAMG/files/false_apgs.csv
CheckAMG/files/false_aregs.csv
CheckAMG/files/hmm_id_to_name.csv
CheckAMG/files/lgbm_feature_names.joblib
CheckAMG/files/lgbm_model.joblib
CheckAMG/files/lgbm_thresholds.joblib
CheckAMG/files/mobile_genes.csv
CheckAMG/files/viral_hallmark_genes.csv
CheckAMG/files/vscores.csv
CheckAMG/scripts/CheckAMG_annotate.py
CheckAMG/scripts/CheckAMG_annotate.smk
CheckAMG/scripts/add_annots.py
CheckAMG/scripts/annotate_hmm.py
CheckAMG/scripts/checkAMG_ASCII.py
CheckAMG/scripts/check_circular.py
CheckAMG/scripts/curate_annots.py
CheckAMG/scripts/download_dbs.py
CheckAMG/scripts/filter_by_cds.py
CheckAMG/scripts/filter_by_length.py
CheckAMG/scripts/genome_context.py
CheckAMG/scripts/load_prot_paths.py
CheckAMG/scripts/make_final_table.py
CheckAMG/scripts/map_protein_data.py
CheckAMG/scripts/organize_proteins.py
CheckAMG/scripts/run_pyrodigal.py
checkamg.egg-info/PKG-INFO
checkamg.egg-info/SOURCES.txt
checkamg.egg-info/dependency_links.txt
checkamg.egg-info/entry_points.txt
checkamg.egg-info/requires.txt
checkamg.egg-info/top_level.txt