runi.ac.il hadar.pur@post.runi.ac.il {{today_date}}
Input Target Sequence Unwanted Patterns
Elimination Elimination Process
Results DNA Sequences Difference Detailed substitutions relative to the target sequence Optimized Sequence

Input

Target Sequence:

{{input}}

Unwanted Patterns:

{{patterns}}

Elimination

{% if num_of_coding_regions > 0 %}

The following ORFs were identified in the target sequence:

{{ highlight_input | safe }}

A total of {{ num_of_coding_regions }} ORFs have been identified:

    {% for key, value in regions_list -%}
  1. {{ value }}
    2. {% endfor %}
{% if excluded_regions_list and excluded_regions_list|length > 0 %}

The specific ORFs that the user wish to exclude from the elimination process are as follows:

    {% for key, value in excluded_regions_list -%}
  1. {{ value }}
    2. {% endfor %}

These coding regions will be reclassified as non-coding areas.


The target sequence has been updated based on the selected coding regions:

{{ highlight_selected | safe }}

{% else %} {% if execution_mode == 'GUI' %}

All ORFs are assumed to be coding regions since none were selected using GUI.

{% else %}

All ORFs are assumed to be coding regions because BioSynth was executed using CLI.

{% endif %} {% endif %} {% else %}

No ORFs were identified in the provided target sequence.

{% endif %}

Elimination Process

{{elimination_process_description}}

Non-Coding regions:

{{non_coding_region_cost_description}}

Coding regions:

{{coding_region_cost_description}}

Results

DNA Sequences Difference:

{{index_seq_str}}
{{marked_input_seq}}
{{marked_optimized_seq}}

Detailed substitutions relative to the target sequence:

{{detailed_changes}}

Optimized Sequence:

{{optimized_seq}}