anndata
click
cycler
dask<=2024.11.2,>=2024.4.1
geopandas
loguru
matplotlib
napari>=0.6.2
napari-matplotlib
numba
numpy
packaging
pandas
pillow
pyqtgraph
qtpy
scanpy
scipy
shapely
scikit-learn
spatialdata>=0.2.6
superqt
typing_extensions>=4.8.0
vispy
xarray
xarray-datatree

[all]
napari[pyqt5]

[bermuda]
bermuda

[doc]
sphinx>=4.5
sphinx-book-theme>=1.0.0
myst-parser
sphinxcontrib-bibtex>=1.0.0
sphinx-autodoc-typehints>=1.11.0
sphinx-autobuild
scanpydoc
ipykernel
ipython
sphinx-copybutton
sphinx-qt-documentation
myst-nb
squidpy

[pre]
spatialdata>=0.1.0-pre0

[readthedocs]
pydantic>2

[test]
loguru
pytest
pytest-cov
pytest-mock
pytest-qt
pre-commit>=2.9.0
