LICENSE
README.md
pyproject.toml
bigecyhmm/__init__.py
bigecyhmm/__main__.py
bigecyhmm/custom_db.py
bigecyhmm/diagram_cycles.py
bigecyhmm/hmm_search.py
bigecyhmm/utils.py
bigecyhmm/visualisation.py
bigecyhmm.egg-info/PKG-INFO
bigecyhmm.egg-info/SOURCES.txt
bigecyhmm.egg-info/dependency_links.txt
bigecyhmm.egg-info/entry_points.txt
bigecyhmm.egg-info/requires.txt
bigecyhmm.egg-info/top_level.txt
bigecyhmm/hmm_databases/README.md
bigecyhmm/hmm_databases/custom_carbon_cycle.json
bigecyhmm/hmm_databases/custom_nitrogen_cycle.json
bigecyhmm/hmm_databases/custom_other_cycle.json
bigecyhmm/hmm_databases/custom_phosphorus_cycle.json
bigecyhmm/hmm_databases/custom_sulfur_cycle.json
bigecyhmm/hmm_databases/cycle_genes_phosphorus.tsv
bigecyhmm/hmm_databases/cycle_pathways.tsv
bigecyhmm/hmm_databases/hmm_files.zip
bigecyhmm/hmm_databases/hmm_table_template.tsv
bigecyhmm/hmm_databases/hydrogenotrophic_salt_caverns.json
bigecyhmm/templates/template_carbon_cycle_total.png
bigecyhmm/templates/template_nitrogen_cycle_total.png
bigecyhmm/templates/template_other_cycle_total.png
bigecyhmm/templates/template_phosphorus_cycle.png
bigecyhmm/templates/template_phosphorus_genes.png
bigecyhmm/templates/template_sulfur_cycle_total.png
test/test_custom_db.py
test/test_database.py
test/test_diagram_cycles.py
test/test_hmm_search.py
test/test_utils.py
test/test_visualisation.py