.gitignore
.travis.yml
LICENCE.txt
MANIFEST.in
README.rst
ez_setup.py
pypi-readme.rst
setup.py
dnacauldron/__init__.py
dnacauldron/tools.py
dnacauldron/version.py
dnacauldron.egg-info/PKG-INFO
dnacauldron.egg-info/SOURCES.txt
dnacauldron.egg-info/dependency_links.txt
dnacauldron.egg-info/requires.txt
dnacauldron.egg-info/top_level.txt
dnacauldron/AssemblyMix/AssemblyMix.py
dnacauldron/AssemblyMix/BASICLigationMix.py
dnacauldron/AssemblyMix/Filter.py
dnacauldron/AssemblyMix/FragmentsChain.py
dnacauldron/AssemblyMix/GibsonAssemblyMix.py
dnacauldron/AssemblyMix/RestrictionLigationMix.py
dnacauldron/AssemblyMix/__init__.py
dnacauldron/StickyEndsSeq/StickyEnd.py
dnacauldron/StickyEndsSeq/StickyEndsSeq.py
dnacauldron/StickyEndsSeq/StickyEndsSeqRecord.py
dnacauldron/StickyEndsSeq/__init__.py
dnacauldron/reports/__init__.py
dnacauldron/reports/plots.py
dnacauldron/reports/reports.py
dnacauldron/utils/__init__.py
dnacauldron/utils/insert_parts_on_backbones.py
dnacauldron/utils/utils.py
docs/Makefile
docs/README.md
docs/conf.py
docs/favicon.png
docs/index.rst
docs/make.bat
docs/makehtml.sh
docs/ref.rst
docs/_static/css/main.css
docs/_static/images/html_logo.png
docs/_static/images/html_logo_old.png
docs/_static/images/principle.png
docs/_static/images/pw_maze_dark.png
docs/_static/images/pw_maze_white.png
docs/_static/images/report_screenshot.jpg
docs/_static/images/title.png
examples/backbone_autoselection.py
examples/combinatorial_assembly.py
examples/connector_selection.py
examples/full_report.py
examples/sapI_assembly.py
examples/single_assembly.py
tests/test_basics.py