autodocsumm>=0.2.7
biopython
black
breathe
codecov
coverage
dendropy
flake8
h5py>=2.6.0
jsonschema>=3.0.0
jupyter-book>=0.12.1
kastore
lshmm>=0.0.8
matplotlib
meson>=0.61.0
msgpack>=1.0.0
msprime>=1.0.0
networkx
newick
ninja
numpy<2
packaging
portion
pre-commit
pyparsing 
pysam
pytest
pytest-cov
pytest-xdist
si-prefix
sphinx==4.5
sphinx-argparse
sphinx-autodoc-typehints>=1.18.3
sphinx-issues
sphinx-jupyterbook-latex
sphinxcontrib-prettyspecialmethods
tqdm
sphinx-book-theme
tszip
pydata_sphinx_theme>=0.7.2
svgwrite>=1.1.10
xmlunittest
