#open deep research
open_deep_research/*
data/*
.geo_cache/
.geo_cache/*
workspaces/
workspaces/*
cdk.out/
cdk.out/*

#kevin notes
kevin_notes/*
kevin_notes_completed/*

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

#pytorch lighning logs
lightning_logs/
lightning_logs/*
*_scivi_model/
*_scivi_model/*

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# Lobster AI specific
.lobster/
.lobster_workspace/
data/exports/*
!data/exports/.gitkeep

# Bioinformatics data files
*.h5ad
*.h5
*.gz
*.tar
*.zip
geo_cache/
*.soft
*.txt.gz
*.pt

# IDE
.vscode/
.idea/
*.swp
*.swo
*~

# OS
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db

# Temporary files
*.tmp
*.temp
*.bak
*.backup

# Logs
*.log
logs/

# Config files with secrets
.env.local
.env.production
config.local.*

# Model cache
models/
.cache/

# Langfuse
.langfuse/

# ===================================
# LOBSTER AI PROPRIETARY COMPONENTS
# ===================================
# Cloud implementation (keep private)
lobster-cloud/
lobster-server/

# AWS/Cloud deployment files
aws_setup_guide.md
deploy_to_aws.sh
test_aws_deployment.py
CLOUD_USAGE_GUIDE.md

# Cloud-specific documentation
*-cloud-*
*cloud*config*
deployment/
infrastructure/

# AWS credentials and configs
*.pem
*.key
aws-config/
.aws/
terraform.tfstate*
*.tfvars

# Cloud test files
test_cloud_*.py
*_cloud_test.py

# Business/implementation details
implementation_plan.md
NEXT_AGENT_INSTRUCTIONS.md
BUSINESS_STRATEGY.md
PRODUCTION_CLEANUP_PLAN.md

# Private documentation
*_PRIVATE.md
INTERNAL_*.md
