numpy>=1.21.0
pandas>=1.3.0
pysam>=0.18.0
rich-click>=1.5.0
torch>=1.11.0
loguru>=0.6.0
scikit-learn>=1.0.0
tqdm>=4.62.0
xgboost>=1.6.0
joblib>=1.1.0
psutil>=5.8.0
leidenalg>=0.9.0
igraph>=0.10.0

# Optional dependencies:
# For plotting features: pip install remag[plotting]
#   - matplotlib>=3.5.0
#   - umap-learn>=0.5.0

# For GPU acceleration (conda only):
#   conda install -c rapidsai -c conda-forge cuml cudf cupy
# Note: GPU packages not available via pip due to CUDA dependencies
