LICENSE
README.md
agg_dist.py
comb_json.py
depp-place-rRNA-one-type.sh
depp-place-rRNA.sh
merge_json.py
run_upp.sh
seq_sep.py
setup.py
train_cluster_depp.sh
train_depp.py
train_depp_recon.py
wol_placement.sh
depp/Agg_model.py
depp/Agg_model_recon.py
depp/Model_new.py
depp/Model_pl.py
depp/Model_pl.split.py
depp/Model_recon.py
depp/__init__.py
depp/assign_cluster_by_placement.py
depp/combine_similar_seq.py
depp/count_gapped_ratio.py
depp/data.py
depp/data.split.py
depp/data_recon.py
depp/default_config.py
depp/depp_distance.py
depp/depp_distance_recon.py
depp/distance_correction.py
depp/filter_by_entropy_gap.sh
depp/get_names_by_entropy_gap.py
depp/get_tree_dist.py
depp/grep_jplace.py
depp/grep_seq.py
depp/grep_seq_group.py
depp/select_placement.py
depp/select_species_by_distance.py
depp/set_bl_one.py
depp/submodule.py
depp/test_scripts.py
depp/utils.py
depp_test.egg-info/PKG-INFO
depp_test.egg-info/SOURCES.txt
depp_test.egg-info/dependency_links.txt
depp_test.egg-info/not-zip-safe
depp_test.egg-info/requires.txt
depp_test.egg-info/top_level.txt