Metadata-Version: 2.4
Name: consenrich
Version: 0.3.0b1
Summary: Genome-wide estimation of signals hidden in noisy multi-sample HTS datasets
Author-email: "Nolan H. Hamilton" <nolan.hamilton@unc.edu>
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# Consenrich

Consenrich is an adaptive linear filter for genome-wide estimation of signals hidden in
noisy multi-sample HTS datasets. A corresponding manuscript preprint is available on [bioRxiv](https://www.biorxiv.org/content/10.1101/2025.02.05.636702v2).

Consenrich supports a variety of functional genomics assays including ATAC-seq, DNase-seq, ChIP-seq, CUT&RUN, etc.

![Simplified Schematic of Consenrich.](docs/images/noise.png)

See [Documentation](https://nolan-h-hamilton.github.io/Consenrich/) for usage examples, installation details, configuration options, and API reference.

---

## Manuscript Preprint and Citation

A manuscript preprint is available on [bioRxiv](https://www.biorxiv.org/content/10.1101/2025.02.05.636702v2).

**BibTeX Citation**

```bibtex
@article {Hamilton2025,
	author = {Hamilton, Nolan H and Huang, Yu-Chen E and McMichael, Benjamin D and Love, Michael I and Furey, Terrence S},
	title = {Genome-Wide Uncertainty-Moderated Extraction of Signal Annotations from Multi-Sample Functional Genomics Data},
	year = {2025},
	doi = {10.1101/2025.02.05.636702},
	publisher = {Cold Spring Harbor Laboratory},
	journal = {bioRxiv}
}
```
