.gitignore
.readthedocs.yml
.style.yapf
LICENSE
MANIFEST.in
README.md
codecov.yml
conftest.py
environment.yml
imagej_roi_converter.py
requirements.txt
setup.cfg
setup.py
tox.ini
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/installation-issue.md
.github/workflows/test_and_deploy.yml
cellpose_plus/__init__.py
cellpose_plus/__main__.py
cellpose_plus/cell_brightness.py
cellpose_plus/cli.py
cellpose_plus/core.py
cellpose_plus/denoise.py
cellpose_plus/dynamics.py
cellpose_plus/export.py
cellpose_plus/io.py
cellpose_plus/metrics.py
cellpose_plus/models.py
cellpose_plus/plot.py
cellpose_plus/resnet_torch.py
cellpose_plus/segformer.py
cellpose_plus/test_mkl.py
cellpose_plus/train.py
cellpose_plus/transforms.py
cellpose_plus/utils.py
cellpose_plus/version.py
cellpose_plus.egg-info/PKG-INFO
cellpose_plus.egg-info/SOURCES.txt
cellpose_plus.egg-info/dependency_links.txt
cellpose_plus.egg-info/entry_points.txt
cellpose_plus.egg-info/requires.txt
cellpose_plus.egg-info/top_level.txt
docs/api.rst
docs/benchmark.rst
docs/cli.rst
docs/command.rst
docs/conf.py
docs/distributed.rst
docs/do3d.rst
docs/faq.rst
docs/gui.rst
docs/index.rst
docs/inputs.rst
docs/installation.rst
docs/models.rst
docs/notebook.rst
docs/openvino.rst
docs/outputs.rst
docs/requirements.txt
docs/restore.rst
docs/settings.rst
docs/train.rst
docs/_static/cellpose_to_imagej.gif
docs/_static/ex_seg.png
docs/_static/favicon.ico
docs/_static/fig1.PNG
notebooks/Cellpose_cell_segmentation_2D_prediction_only.ipynb
notebooks/run_cellpose.ipynb
notebooks/run_cellpose3.ipynb
notebooks/run_cellpose_2.ipynb
notebooks/run_cellpose_GPU.ipynb
notebooks/run_cyto3.ipynb
paper/1.0/cp_unets.py
paper/1.0/performance_figs.py
paper/1.0/train_maskrcnn.py
paper/2.0/datasets.py
paper/2.0/train_specialists.py
paper/2.0/train_subsets.py
paper/3.0/README.md
paper/3.0/analysis.py
paper/3.0/care.py
paper/3.0/fig_utils.py
paper/3.0/figures.py
paper/3.0/noise2self.py
paper/3.0/noise2void.py
paper/3.0/train_subsets.py
paper/neurips/analysis.py
paper/neurips/fig_utils.py
paper/neurips/figures.py
pyinstaller/cli.py
pyinstaller/cli_mac.spec
pyinstaller/cli_windows.spec
pyinstaller/condaenv.pn6xp8vf.requirements.txt
pyinstaller/cp_mac_pyinstaller.yml
repo/Cellpose_plus_online.ipynb
repo/cellpose_gui.png
repo/demo_cellpose_plus.gif
repo/mask_menu.png
repo/mask_snapshots.png
repo/mask_type_selection.png
repo/metrics_panel.png
repo/results_folder_example.png
repo/workflow.png
tests/test_denoise.py
tests/test_dynamics.py
tests/test_import.py
tests/test_output.py
tests/test_shape.py
tests/test_train.py
tests/test_transforms.py