Metadata-Version: 2.4
Name: gseda
Version: 1.16.1
Summary: gsetl
Project-URL: Homepage, https://github.com/keithyin/gsda
Project-URL: Issues, https://github.com/keithyin/gsda/issues
Author-email: keithyin <yinpenghhz@hotmail.com>
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.8
Requires-Dist: mappy
Requires-Dist: numba==0.58.0
Requires-Dist: numpy==1.24.4
Requires-Dist: polars==1.8.2
Requires-Dist: pyarrow==17.0.0
Requires-Dist: pymsaviz==0.4.2
Requires-Dist: pysam>=0.22
Requires-Dist: seaborn>=0.13
Requires-Dist: semver==3.0.2
Requires-Dist: tqdm>=4.67
Description-Content-Type: text/markdown

gseda
how to pack: https://cloud.tencent.com/developer/article/2401343

## bam_filter

* drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

## bam_surgery

* insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
* insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

## fact_table_nan

* used to analysis the fact tables that gsetl generated

## msa_view

* show pileup msa alignment result


# ChangeLog

## 0.0.26

* + phreq-ana-cli

## 0.0.25

* + longIndel analysis

## 0.0.23

* + mm2 version check

## 0.0.21

* + bam-basic-stat-cli
* + msa-view-cli
