.gitignore
.gitlab-ci.yml
AUTHORS.md
CHANGELOG.md
CONTRIBUTING.md
LICENSE.md
README.md
RELEASING.md
install.ps1
install.sh
mkdocs.yml
pyproject.toml
requirements.txt
setup.cfg
setup.py
docs/development.md
docs/index.md
docs/install.md
docs/users.md
docs/img/curved_lane.png
docs/img/lanes.png
docs/img/measurement_lanes.png
docs/img/projects.png
docs/img/types_and_edit_mode.png
iocbio/__init__.py
iocbio.gel.egg-info/PKG-INFO
iocbio.gel.egg-info/SOURCES.txt
iocbio.gel.egg-info/dependency_links.txt
iocbio.gel.egg-info/entry_points.txt
iocbio.gel.egg-info/requires.txt
iocbio.gel.egg-info/top_level.txt
iocbio/gel/__init__.py
iocbio/gel/app.py
iocbio/gel/const.py
iocbio/gel/logging.ini
iocbio/gel/application/__init__.py
iocbio/gel/application/container.py
iocbio/gel/application/event_consumer.py
iocbio/gel/application/event_registry.py
iocbio/gel/application/file_digest.py
iocbio/gel/application/number_list.py
iocbio/gel/application/settings_proxy.py
iocbio/gel/application/application_state/__init__.py
iocbio/gel/application/application_state/context.py
iocbio/gel/application/application_state/mode.py
iocbio/gel/application/application_state/state.py
iocbio/gel/application/image/__init__.py
iocbio/gel/application/image/background_method.py
iocbio/gel/application/image/image.py
iocbio/gel/application/image/image_source.py
iocbio/gel/application/image/image_source_setup.py
iocbio/gel/application/image/image_state.py
iocbio/gel/application/image/omero_client.py
iocbio/gel/application/image/processing_cache.py
iocbio/gel/application/image/region.py
iocbio/gel/application/image/repository_backend.py
iocbio/gel/application/image/repository_backend_local.py
iocbio/gel/application/image/repository_backend_omero.py
iocbio/gel/application/thread/__init__.py
iocbio/gel/application/thread/cache_operations.py
iocbio/gel/application/thread/fetch_image_from_omero.py
iocbio/gel/application/thread/job.py
iocbio/gel/application/thread/load_image_preview.py
iocbio/gel/application/thread/pool_worker.py
iocbio/gel/application/thread/rolling_ball.py
iocbio/gel/application/thread/sequential_worker.py
iocbio/gel/application/thread/thread_pool.py
iocbio/gel/application/thread/worker.py
iocbio/gel/command/__init__.py
iocbio/gel/command/command.py
iocbio/gel/command/command_set.py
iocbio/gel/command/create_entity.py
iocbio/gel/command/delete_collector.py
iocbio/gel/command/delete_entity.py
iocbio/gel/command/history_manager.py
iocbio/gel/command/project_delete_collector.py
iocbio/gel/command/transaction_set.py
iocbio/gel/command/update_entity.py
iocbio/gel/command/update_many_relationship.py
iocbio/gel/command/update_project.py
iocbio/gel/db/__init__.py
iocbio/gel/db/base.py
iocbio/gel/db/database_client.py
iocbio/gel/db/database_setup.py
iocbio/gel/db/database_type.py
iocbio/gel/db/entity_visitor.py
iocbio/gel/db/alembic/__init__.py
iocbio/gel/db/alembic/alembic.ini
iocbio/gel/db/alembic/env.py
iocbio/gel/db/alembic/execute_sqlfile.py
iocbio/gel/db/alembic/script.py.mako
iocbio/gel/db/alembic/versions/8b8ae59755af_synced_lane_widths.py
iocbio/gel/db/alembic/versions/__init__.py
iocbio/gel/db/alembic/versions/create_views_set_1.sql
iocbio/gel/db/alembic/versions/d8d292a431fe_allow_to_sync_measurement_rois.py
iocbio/gel/db/alembic/versions/drop_views_set_1.sql
iocbio/gel/db/alembic/versions/e78898a9c9f1_change_transfer_to_ref_time.py
iocbio/gel/db/alembic/versions/fbf8b6944c61_limit_protein_to_non_negative_value.py
iocbio/gel/db/alembic/versions/fd339f2a6eb4_projects.py
iocbio/gel/db/alembic/versions/fd339f2a6eb4_upgrade.sql
iocbio/gel/db/alembic/versions/nrobvvzilln3_create_views.py
iocbio/gel/db/alembic/versions/wrsc7ffn1q95_revised_initial_version.py
iocbio/gel/db/connection_parameters/__init__.py
iocbio/gel/db/connection_parameters/connection_parameters.py
iocbio/gel/db/connection_parameters/postgresql_parameters.py
iocbio/gel/db/connection_parameters/sqlite_parameters.py
iocbio/gel/domain/__init__.py
iocbio/gel/domain/curved_lane_region.py
iocbio/gel/domain/detect_analysis_region.py
iocbio/gel/domain/gel.py
iocbio/gel/domain/gel_image.py
iocbio/gel/domain/gel_image_lane.py
iocbio/gel/domain/gel_lane.py
iocbio/gel/domain/measurement.py
iocbio/gel/domain/measurement_lane.py
iocbio/gel/domain/measurement_type.py
iocbio/gel/domain/plot.py
iocbio/gel/domain/plot_region.py
iocbio/gel/domain/project.py
iocbio/gel/domain/xls_writer.py
iocbio/gel/gui/__init__.py
iocbio/gel/gui/icons.py
iocbio/gel/gui/style.py
iocbio/gel/gui/user_resized.py
iocbio/gel/gui/contexts/__init__.py
iocbio/gel/gui/contexts/analysis.py
iocbio/gel/gui/contexts/gels.py
iocbio/gel/gui/contexts/measurement_types.py
iocbio/gel/gui/contexts/projects.py
iocbio/gel/gui/contexts/settings.py
iocbio/gel/gui/contexts/single_gel.py
iocbio/gel/gui/dialogs/__init__.py
iocbio/gel/gui/dialogs/db_selection.py
iocbio/gel/gui/dialogs/select_image.py
iocbio/gel/gui/dialogs/select_image_factory.py
iocbio/gel/gui/dialogs/select_image_local.py
iocbio/gel/gui/dialogs/select_image_omero.py
iocbio/gel/gui/dialogs/database_connection_settings/__init__.py
iocbio/gel/gui/dialogs/database_connection_settings/database_connection_settings.py
iocbio/gel/gui/dialogs/database_connection_settings/db_selection_form.py
iocbio/gel/gui/dialogs/database_connection_settings/postgresql_connection_settings.py
iocbio/gel/gui/dialogs/database_connection_settings/sqlite_connection_settings.py
iocbio/gel/gui/dialogs/image_source_settings/__init__.py
iocbio/gel/gui/dialogs/image_source_settings/image_source_form.py
iocbio/gel/gui/dialogs/image_source_settings/image_source_settings.py
iocbio/gel/gui/dialogs/image_source_settings/local_settings.py
iocbio/gel/gui/dialogs/image_source_settings/omero_settings.py
iocbio/gel/gui/models/__init__.py
iocbio/gel/gui/models/checkbox_proxy.py
iocbio/gel/gui/models/gel_images_model.py
iocbio/gel/gui/models/gel_lanes_model.py
iocbio/gel/gui/models/gels_model.py
iocbio/gel/gui/models/measurement_lanes_model.py
iocbio/gel/gui/models/measurement_types_model.py
iocbio/gel/gui/models/measurements_model.py
iocbio/gel/gui/models/projects_gels_model.py
iocbio/gel/gui/models/projects_tree_model.py
iocbio/gel/gui/models/proxy_table_model.py
iocbio/gel/gui/models/table_model.py
iocbio/gel/gui/models/tracking_model.py
iocbio/gel/gui/models/tree_model.py
iocbio/gel/gui/models/items/__init__.py
iocbio/gel/gui/models/items/tree_item.py
iocbio/gel/gui/resources/__init__.py
iocbio/gel/gui/resources/rc_icons.py
iocbio/gel/gui/views/__init__.py
iocbio/gel/gui/views/gel_images_view.py
iocbio/gel/gui/views/table_view.py
iocbio/gel/gui/views/tree_view.py
iocbio/gel/gui/views/delegates/__init__.py
iocbio/gel/gui/views/delegates/combobox_delegate.py
iocbio/gel/gui/views/delegates/datetime_delegate.py
iocbio/gel/gui/views/delegates/multiselect_delegate.py
iocbio/gel/gui/views/delegates/nobackground_delegate.py
iocbio/gel/gui/views/delegates/non_negative_double.py
iocbio/gel/gui/views/delegates/selectable_row_delegate.py
iocbio/gel/gui/widgets/__init__.py
iocbio/gel/gui/widgets/confirm_popup.py
iocbio/gel/gui/widgets/control_slider.py
iocbio/gel/gui/widgets/gel_form.py
iocbio/gel/gui/widgets/gel_image_form.py
iocbio/gel/gui/widgets/gel_measurements.py
iocbio/gel/gui/widgets/mandatory_line_edit.py
iocbio/gel/gui/widgets/measurement_lanes.py
iocbio/gel/gui/widgets/multiple_project_selection.py
iocbio/gel/gui/widgets/project_selection.py
iocbio/gel/gui/widgets/sidebar.py
iocbio/gel/gui/widgets/status_bar.py
iocbio/gel/gui/widgets/viewbox_empty_contextmenu.py
iocbio/gel/gui/widgets/warning_popup.py
iocbio/gel/gui/widgets/analysis_steps/__init__.py
iocbio/gel/gui/widgets/analysis_steps/active_lanes.py
iocbio/gel/gui/widgets/analysis_steps/adjust.py
iocbio/gel/gui/widgets/analysis_steps/adjust_roi.py
iocbio/gel/gui/widgets/analysis_steps/background_subtraction.py
iocbio/gel/gui/widgets/analysis_steps/curved_line_roi.py
iocbio/gel/gui/widgets/analysis_steps/passive_lanes.py
iocbio/gel/gui/widgets/analysis_steps/raw.py
iocbio/gel/gui/widgets/analysis_steps/background/__init__.py
iocbio/gel/gui/widgets/analysis_steps/background/ball_layout.py
iocbio/gel/gui/widgets/analysis_steps/background/bg_color_box.py
iocbio/gel/gui/widgets/analysis_steps/background/bg_subtraction_box.py
iocbio/gel/gui/widgets/analysis_steps/background/ellipsoid_layout.py
iocbio/gel/gui/widgets/analysis_steps/background/parameters.py
iocbio/gel/gui/widgets/analysis_steps/intensity/__init__.py
iocbio/gel/gui/widgets/analysis_steps/intensity/intensity_plot.py
iocbio/gel/gui/widgets/analysis_steps/intensity/lane_intensity_plot.py
iocbio/gel/gui/widgets/analysis_steps/intensity/lane_plot_list.py
iocbio/gel/gui/widgets/analysis_steps/intensity/measurement_intensity_plot.py
iocbio/gel/gui/widgets/analysis_steps/intensity/measurement_plot_list.py
iocbio/gel/gui/widgets/analysis_steps/intensity/plot_list.py
iocbio/gel/gui/widgets/analysis_steps/intensity/zero_line.py
iocbio/gel/gui/widgets/toolbars/__init__.py
iocbio/gel/gui/widgets/toolbars/add_gel.py
iocbio/gel/gui/widgets/toolbars/main.py
iocbio/gel/gui/windows/__init__.py
iocbio/gel/gui/windows/main.py
iocbio/gel/repository/__init__.py
iocbio/gel/repository/entity_repository.py
iocbio/gel/repository/export_repository.py
iocbio/gel/repository/gel_image_lane_repository.py
iocbio/gel/repository/gel_image_repository.py
iocbio/gel/repository/gel_lane_repository.py
iocbio/gel/repository/gel_repository.py
iocbio/gel/repository/image_repository.py
iocbio/gel/repository/measurement_lane_repository.py
iocbio/gel/repository/measurement_repository.py
iocbio/gel/repository/measurement_type_repository.py
iocbio/gel/repository/project_repository.py
packaging/pyinstaller/app.spec
packaging/pyinstaller/gel.bat
resources/icons.qrc
resources/icons/gel.svg
resources/icons/feather/arrow-right.svg
resources/icons/feather/coffee.svg
resources/icons/feather/folder.svg
resources/icons/feather/image.svg
resources/icons/feather/plus.svg
resources/icons/feather/readme-and-license.md
resources/icons/feather/x.svg
scripts/generate_image.py
sql/README.md
sql/gel_raw_data.sql
sql/gel_relative_data.sql