
#ignore snakemake logs
workflow/.snakemake/
.snakemake/

#ignore reports
workflow/reports/

#ignore logs
workflow/logs

#ignore notebooks for now
workflow/notebooks
workflow/scripts/samples.ipynb

#test data output
tests/test
tests/vsearch

# ignore apptainer
.cache/
.conda/
.condarc
.DS_Store
!tests/data/

# ignore galaxy tests
GalaxyTest/
__pycache__/