# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
!examples/imaging-starter/app/code/lib/
!examples/imaging-starter/app/code/lib/**
!examples/genomics-starter/app/code/lib/
!examples/genomics-starter/app/code/lib/**
!packages/vigil/src/vigil/examples/imaging-starter/app/code/lib/
!packages/vigil/src/vigil/examples/imaging-starter/app/code/lib/**
!packages/vigil/src/vigil/examples/genomics-starter/app/code/lib/
!packages/vigil/src/vigil/examples/genomics-starter/app/code/lib/**
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/

# Virtual environments
.env
.env.*
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# uv
.venv/

# Snakemake
.snakemake/

# Vigil AI cache
.vigil-ai-cache/

# Modern Python tools
.mypy_cache/
.dmypy.json
.ruff_cache/
.python-version
.python_history
__pypackages__/
.cython_debug/
site/

# IDEs and editors
.vscode/
.idea/
*.swp
*.swo
*~

# OS generated files
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db

# Project-specific
# Generated artifacts and receipts
**/app/code/artifacts/
**/app/code/receipts/
**/app/code/ui/workbench_bootstrap.json

# Temporary files
*.tmp
*.temp
*.bak
repomix-output.txt

# Logs
*.log
logs/
*.log.*

# Jupyter Notebook
.ipynb_checkpoints

# Node.js (if any)
node_modules/
npm-debug.log*
yarn-debug.log*
yarn-error.log*

# Local development
.cursor/
.claude/

# Vigil workspace specs (regenerated)
.vigil/workspace.spec.json
**/.vigil/keys/
**/.vigil/cache/
**/.vigil/registry.db
site/

# Temporary test projects and reports
test-project/
final-test-suite/
*_REPORT.md
*_SUMMARY.md
*_COMPLETE.md
*_CHECKLIST.md
*_STATUS.md
*_FIXES.md
RELEASE_NOTES_*.md
