# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
.DS_Store
# C extensions
*.so
*.DS_Store
# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec
*.claude/

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/
.pytest_cache/
__pycache__/
*.pyc

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# Virtual environments
env/
venv/
ENV/
env.bak/
venv.bak/
.venv/

# VSCode
.vscode/
*.code-workspace

# PyCharm
.idea/
*.iml
*.iws
*.ipr

# macOS
.DS_Store

# Docking results
docking_results*/
temp_pandadock/

# Log files
*.log
pandadock_*.log


# Temporary files
temp_*
tmp_*
*.tmp

# Documentation builds
docs/build/
docs/_build/

# Local configuration files
local_config.py
config_local.py

# Cleanup summary files (these should not be in repo)
CODEBASE_CLEANUP_SUMMARY.md
PDB_FIX_SUMMARY.md

