LICENSE.md
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
./bwamem/__init__.py
./bwamem/fastx_reader.py
./bwamem/libbwa.py
bwa/QSufSort.c
bwa/QSufSort.h
bwa/QSufSort.o
bwa/bamlite.c
bwa/bamlite.h
bwa/bntseq.c
bwa/bntseq.h
bwa/bntseq.o
bwa/bwa.c
bwa/bwa.h
bwa/bwa.o
bwa/bwamem.c
bwa/bwamem.h
bwa/bwamem.o
bwa/bwamem_extra.c
bwa/bwamem_extra.o
bwa/bwamem_pair.c
bwa/bwamem_pair.o
bwa/bwape.c
bwa/bwase.c
bwa/bwase.h
bwa/bwaseqio.c
bwa/bwashm.c
bwa/bwt.c
bwa/bwt.h
bwa/bwt.o
bwa/bwt_gen.c
bwa/bwt_gen.o
bwa/bwt_lite.c
bwa/bwt_lite.h
bwa/bwtaln.c
bwa/bwtaln.h
bwa/bwtgap.c
bwa/bwtgap.h
bwa/bwtindex.c
bwa/bwtindex.o
bwa/bwtsw2.h
bwa/bwtsw2_aux.c
bwa/bwtsw2_chain.c
bwa/bwtsw2_core.c
bwa/bwtsw2_main.c
bwa/bwtsw2_pair.c
bwa/example.c
bwa/fastmap.c
bwa/is.c
bwa/is.o
bwa/kbtree.h
bwa/khash.h
bwa/kopen.c
bwa/kseq.h
bwa/ksort.h
bwa/kstring.c
bwa/kstring.h
bwa/kstring.o
bwa/ksw.c
bwa/ksw.h
bwa/ksw.o
bwa/kthread.c
bwa/kthread.o
bwa/kvec.h
bwa/libbwa.a
bwa/main.c
bwa/malloc_wrap.c
bwa/malloc_wrap.h
bwa/malloc_wrap.o
bwa/maxk.c
bwa/neon_sse.h
bwa/pemerge.c
bwa/rle.c
bwa/rle.h
bwa/rle.o
bwa/rope.c
bwa/rope.h
bwa/rope.o
bwa/scalar_sse.h
bwa/utils.c
bwa/utils.h
bwa/utils.o
bwamem/__init__.py
bwamem/fastx_reader.py
bwamem/libbwa.py
bwamem/libbwamem.c
bwamem/memopts.c
bwamem.egg-info/PKG-INFO
bwamem.egg-info/SOURCES.txt
bwamem.egg-info/dependency_links.txt
bwamem.egg-info/entry_points.txt
bwamem.egg-info/requires.txt
bwamem.egg-info/top_level.txt
tests/create_demo_files.py
tests/example.py
tests/process_paired_reads.py
tests/quick_demo.py
tests/test_bwamem.py
tests/test_fastx_reader.py
tests/test_paired_mapping.py