anndata
pandas
numpy
pyteomics

[dev]
pytest>=7.0.0
black~=25.1
flake8~=7.0
isort~=5.0
pre-commit~=3.0
pylint~=3.0
pytest~=8.0

[docs]
sphinx>=8.2.1
sphinx-book-theme>=1.1.0
sphinx-autodoc-typehints>=2.2.0
sphinx-issues>=5.0.1
sphinx-copybutton
sphinx-toolbox>=3.8.0
sphinxext.opengraph
myst-nb
scanpydoc[theme,typehints]>=0.15.3
awkward>=2.3
IPython
myst_parser
