LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
scripts/__init__.py
scripts/estimate_memory_usage.py
scripts/eval.py
scripts/extract_candidates.py
scripts/match_template.py
scripts/match_template_filters.py
scripts/postprocess.py
scripts/preprocess.py
scripts/preprocessor_gui.py
scripts/pytme_runner.py
scripts/refine_matches.py
tests/__init__.py
tests/test_analyzer.py
tests/test_backends.py
tests/test_density.py
tests/test_extensions.py
tests/test_matching_cli.py
tests/test_matching_data.py
tests/test_matching_exhaustive.py
tests/test_matching_memory.py
tests/test_matching_optimization.py
tests/test_matching_utils.py
tests/test_orientations.py
tests/test_parser.py
tests/test_rotations.py
tests/test_structure.py
tests/data/.DS_Store
tests/data/README.md
tests/data/Blurring/.DS_Store
tests/data/Blurring/blob_width18.npy
tests/data/Blurring/edgegaussian_sigma3.npy
tests/data/Blurring/gaussian_sigma2.npy
tests/data/Blurring/hamming_width6.npy
tests/data/Blurring/kaiserb_width18.npy
tests/data/Blurring/localgaussian_sigma0510.npy
tests/data/Blurring/mean_size5.npy
tests/data/Blurring/ntree_sigma0510.npy
tests/data/Blurring/rank_rank3.npy
tests/data/Raw/.DS_Store
tests/data/Raw/em_map.map
tests/data/Structures/.DS_Store
tests/data/Structures/1pdj.cif
tests/data/Structures/1pdj.pdb
tests/data/Structures/5khe.cif
tests/data/Structures/5khe.ent
tests/data/Structures/5khe.pdb
tests/preprocessing/__init__.py
tests/preprocessing/test_compose.py
tests/preprocessing/test_frequency_filters.py
tests/preprocessing/test_preprocessor.py
tests/preprocessing/test_utils.py
tme/__init__.py
tme/__version__.py
tme/cli.py
tme/density.py
tme/mask.py
tme/matching_data.py
tme/matching_exhaustive.py
tme/matching_optimization.py
tme/matching_scores.py
tme/matching_utils.py
tme/memory.py
tme/orientations.py
tme/parser.py
tme/preprocessor.py
tme/rotations.py
tme/structure.py
tme/types.py
tme/analyzer/__init__.py
tme/analyzer/_utils.py
tme/analyzer/aggregation.py
tme/analyzer/base.py
tme/analyzer/peaks.py
tme/analyzer/proxy.py
tme/backends/__init__.py
tme/backends/_jax_utils.py
tme/backends/_numpyfftw_utils.py
tme/backends/cupy_backend.py
tme/backends/jax_backend.py
tme/backends/matching_backend.py
tme/backends/mlx_backend.py
tme/backends/npfftw_backend.py
tme/backends/pytorch_backend.py
tme/data/__init__.py
tme/data/c48n309.npy
tme/data/c48n527.npy
tme/data/c48n9.npy
tme/data/c48u1.npy
tme/data/c48u1153.npy
tme/data/c48u1201.npy
tme/data/c48u1641.npy
tme/data/c48u181.npy
tme/data/c48u2219.npy
tme/data/c48u27.npy
tme/data/c48u2947.npy
tme/data/c48u3733.npy
tme/data/c48u4749.npy
tme/data/c48u5879.npy
tme/data/c48u7111.npy
tme/data/c48u815.npy
tme/data/c48u83.npy
tme/data/c48u8649.npy
tme/data/c600v.npy
tme/data/c600vc.npy
tme/data/metadata.yaml
tme/data/quat_to_numpy.py
tme/data/scattering_factors.pickle
tme/external/bindings.cpp
tme/filters/__init__.py
tme/filters/_utils.py
tme/filters/bandpass.py
tme/filters/compose.py
tme/filters/ctf.py
tme/filters/reconstruction.py
tme/filters/wedge.py
tme/filters/whitening.py