Index

A

aitchison_mean_and_std() (in module ember_py.sample_replicates)

C

create_parser() (in module ember_py.cli)

E

ember_py module ember_py.cli module ember_py.generate_entropy_metrics module ember_py.generate_pvals module

ember_py.light_ember module ember_py.plots module ember_py.sample_replicates module ember_py.top_genes module

G

generate_balanced_draws() (in module ember_py.sample_replicates)

generate_entropy_metrics() (in module ember_py.generate_entropy_metrics) generate_pvals() (in module ember_py.generate_pvals)

H

highly_specific_to_block() (in module ember_py.top_genes)

highly_specific_to_partition() (in module ember_py.top_genes)

L

light_ember() (in module ember_py.light_ember)

M

module ember_py ember_py.cli ember_py.generate_entropy_metrics ember_py.generate_pvals ember_py.light_ember ember_py.plots ember_py.sample_replicates ember_py.top_genes

N

non_specific_to_partition() (in module ember_py.top_genes)

P

plot_block_specificity() (in module ember_py.plots) plot_partition_specificity() (in module ember_py.plots)

plot_psi_blocks() (in module ember_py.plots) plot_sample_counts() (in module ember_py.plots)

R

run_command() (in module ember_py.cli)

S

safe_divide_sparse() (in module ember_py.generate_entropy_metrics)

safe_log2_sparse() (in module ember_py.generate_entropy_metrics)