Metadata-Version: 2.1
Name: cutseq
Version: 0.0.15
Summary: Automatically cut adapter / barcode / UMI from NGS data
Home-page: https://github.com/y9c/cutseq
License: MIT
Keywords: bioinformatics,NGS,adapter,barcode,UMI
Author: Ye Chang
Author-email: yech1990@gmail.com
Requires-Python: >=3.8,<4.0
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Requires-Dist: cutadapt (>=4.8,<5.0)
Project-URL: Repository, https://github.com/y9c/cutseq
Description-Content-Type: text/markdown

# ✂️ CutSeq

[![Pypi Releases](https://img.shields.io/pypi/v/cutseq.svg)](https://pypi.python.org/pypi/cutseq)
[![Downloads](https://pepy.tech/badge/cutseq)](https://pepy.tech/project/cutseq)

# How to install?

```bash
pip install cutseq
```

## How to use?

```bash
cutseq -a "ACACGACGCTCTTCCGATCTX<XXXAGATCGGAAGAGCACACGTC" test_R1.fq.gz test_R2.fq.gz
```

